ID S5VY88_STRC3 Unreviewed; 810 AA.
AC S5VY88;
DT 16-OCT-2013, integrated into UniProtKB/TrEMBL.
DT 16-OCT-2013, sequence version 1.
DT 27-MAR-2024, entry version 51.
DE SubName: Full=Transcription accessory protein {ECO:0000313|EMBL:AGS72955.1};
GN ORFNames=B446_30755 {ECO:0000313|EMBL:AGS72955.1};
OS Streptomyces collinus (strain DSM 40733 / Tue 365).
OC Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales;
OC Streptomycetaceae; Streptomyces.
OX NCBI_TaxID=1214242 {ECO:0000313|EMBL:AGS72955.1, ECO:0000313|Proteomes:UP000015423};
RN [1] {ECO:0000313|Proteomes:UP000015423}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 40733 / Tue 365 {ECO:0000313|Proteomes:UP000015423};
RA Ruckert C., Szczepanowski R., Goesmann A., Pross E.K., Musiol E.M.,
RA Blin K., Wohlleben W., Puhler A., Weber T., Kalinowski J.;
RT "The complete genome sequence of Streptomyces collinus Tu 365.";
RL Submitted (OCT-2012) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:AGS72955.1, ECO:0000313|Proteomes:UP000015423}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 40733 / Tue 365 {ECO:0000313|Proteomes:UP000015423};
RX PubMed=24140291; DOI=10.1016/j.jbiotec.2013.10.004;
RA Ruckert C., Szczepanowski R., Albersmeier A., Goesmann A., Iftime D.,
RA Musiol E.M., Blin K., Wohlleben W., Puhler A., Kalinowski J., Weber T.;
RT "Complete genome sequence of the kirromycin producer Streptomyces collinus
RT Tu 365 consisting of a linear chromosome and two linear plasmids.";
RL J. Biotechnol. 168:739-740(2013).
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DR EMBL; CP006259; AGS72955.1; -; Genomic_DNA.
DR RefSeq; WP_020943365.1; NC_021985.1.
DR AlphaFoldDB; S5VY88; -.
DR STRING; 1214242.B446_30755; -.
DR KEGG; sci:B446_30755; -.
DR PATRIC; fig|1214242.5.peg.6299; -.
DR eggNOG; COG2183; Bacteria.
DR HOGENOM; CLU_009833_0_2_11; -.
DR Proteomes; UP000015423; Chromosome.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006139; P:nucleobase-containing compound metabolic process; IEA:InterPro.
DR CDD; cd05685; S1_Tex; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR Gene3D; 1.10.10.650; RuvA domain 2-like; 1.
DR Gene3D; 1.10.3500.10; Tex N-terminal region-like; 1.
DR Gene3D; 1.10.150.310; Tex RuvX-like domain-like; 1.
DR Gene3D; 3.30.420.140; YqgF/RNase H-like domain; 1.
DR InterPro; IPR041692; HHH_9.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR010994; RuvA_2-like.
DR InterPro; IPR003029; S1_domain.
DR InterPro; IPR044146; S1_Tex.
DR InterPro; IPR023323; Tex-like_dom_sf.
DR InterPro; IPR023319; Tex-like_HTH_dom_sf.
DR InterPro; IPR018974; Tex-like_N.
DR InterPro; IPR032639; Tex_YqgF.
DR InterPro; IPR006641; YqgF/RNaseH-like_dom.
DR InterPro; IPR037027; YqgF/RNaseH-like_dom_sf.
DR PANTHER; PTHR10724; 30S RIBOSOMAL PROTEIN S1; 1.
DR PANTHER; PTHR10724:SF10; S1 RNA-BINDING DOMAIN-CONTAINING PROTEIN 1; 1.
DR Pfam; PF12836; HHH_3; 1.
DR Pfam; PF17674; HHH_9; 1.
DR Pfam; PF00575; S1; 1.
DR Pfam; PF09371; Tex_N; 1.
DR Pfam; PF16921; Tex_YqgF; 1.
DR SMART; SM00316; S1; 1.
DR SMART; SM00732; YqgFc; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR SUPFAM; SSF47781; RuvA domain 2-like; 2.
DR SUPFAM; SSF158832; Tex N-terminal region-like; 1.
DR PROSITE; PS50126; S1; 1.
DR PROSITE; PS50889; S4; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000015423};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00182}.
FT DOMAIN 656..725
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT REGION 729..810
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 747..773
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 810 AA; 87342 MW; 1E158392541A58F3 CRC64;
MTTPGSVEAG SIEGRIAGEL GVRERQVKAA VELLDGGSTV PFIARYRKEA TEMLDDAQLR
TLEERLRYLR ELEERRTAVL ESVREQGKLT EELEAAIRGA ETKARLEDIY LPYKPKRRTK
AQIAREAGLE PLADGLLGDP SVDPAAAAAA FVDAGKGVAD PQAALEGARA ILTERFSEDA
DLIGELRERM WVRGRLAAKV RDGKEEAGAK FADYFDFAEP FTELPSHRIL AMLRGEKEEV
LDLVLEPEEP TEGPSSYEGI VASKFGIADR GRPADKWLKD TVRWAWRTRL LVHLGIDLRL
RLRTAAEDEA VNVFAANLRD LLLAAPAGTR ATLGLDPGFR TGVKVAVVDA TGKVVATDVI
YPHVPANKWD EALAKLARLA ERHAVDLVAI GNGTASRETD KLAAELIAQH PELKLTKVMV
SEAGASVYSA SEYASRELPD MDVSLRGAVS IARRLQDPLA ELVKIDPKSI GVGQYQHDLS
EVKLSRSLDA VVEDCVNGVG VDVNTASVPL LSRVSGISSG LAENIVAHRD ANGPFTSRSA
LKKVARLGPK AYEQCAGFLR IRGGDDPLDA SSVHPEAYPV VRRMVKAAGQ DVASLIGDTG
TLRSLRPADF VDDTFGLPTV TDILKELEKP GRDPRPAFKT ATFKEGVEKI SDLSSGMVLE
GVVTNVAAFG AFVDIGVHQD GLVHVSAMSK TFVKDPRDVV KPGDIVKVKV LDVDIPRKRI
ALTLRLDDEA APQGQGGGRQ RGAAARPPQQ RQGQGQNQRQ GQGQRQGQGQ GQRQARGGDR
GGRQAPAPAN SAMADALRRA GLLNPKDGRR
//
