ID S8E9G8_9LAMI Unreviewed; 441 AA.
AC S8E9G8;
DT 16-OCT-2013, integrated into UniProtKB/TrEMBL.
DT 16-OCT-2013, sequence version 1.
DT 13-SEP-2023, entry version 34.
DE RecName: Full=UBC core domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=M569_02250 {ECO:0000313|EMBL:EPS72508.1};
OS Genlisea aurea.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea.
OX NCBI_TaxID=192259 {ECO:0000313|EMBL:EPS72508.1, ECO:0000313|Proteomes:UP000015453};
RN [1] {ECO:0000313|EMBL:EPS72508.1, ECO:0000313|Proteomes:UP000015453}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23855885;
RA Leushkin E.V., Sutormin R.A., Nabieva E.R., Penin A.A., Kondrashov A.S.,
RA Logacheva M.D.;
RT "The miniature genome of a carnivorous plant Genlisea aurea contains a low
RT number of genes and short non-coding sequences.";
RL BMC Genomics 14:476-476(2013).
CC -!- SIMILARITY: Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11
CC RNA polymerase family. {ECO:0000256|RuleBase:RU003474}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EPS72508.1}.
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DR EMBL; AUSU01000810; EPS72508.1; -; Genomic_DNA.
DR AlphaFoldDB; S8E9G8; -.
DR OrthoDB; 180749at2759; -.
DR Proteomes; UP000015453; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0005665; C:RNA polymerase II, core complex; IEA:UniProt.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:InterPro.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR CDD; cd00195; UBCc; 1.
DR CDD; cd10508; Zn-ribbon_RPB9; 1.
DR Gene3D; 2.20.25.10; -; 2.
DR Gene3D; 3.10.110.10; Ubiquitin Conjugating Enzyme; 1.
DR InterPro; IPR001529; DNA-dir_RNA_pol_M/15kDasu.
DR InterPro; IPR012164; Rpa12/Rpb9/Rpc10/TFS.
DR InterPro; IPR000608; UBQ-conjugat_E2.
DR InterPro; IPR016135; UBQ-conjugating_enzyme/RWD.
DR InterPro; IPR034012; Zn_ribbon_RPB9_C.
DR InterPro; IPR001222; Znf_TFIIS.
DR PANTHER; PTHR11239; DNA-DIRECTED RNA POLYMERASE; 1.
DR PANTHER; PTHR11239:SF1; DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9; 1.
DR Pfam; PF01096; TFIIS_C; 1.
DR Pfam; PF00179; UQ_con; 1.
DR SMART; SM00661; RPOL9; 1.
DR SMART; SM00212; UBCc; 1.
DR SMART; SM00440; ZnF_C2C2; 1.
DR SUPFAM; SSF54495; UBC-like; 1.
DR SUPFAM; SSF57783; Zinc beta-ribbon; 2.
DR PROSITE; PS50127; UBC_2; 1.
DR PROSITE; PS51133; ZF_TFIIS_2; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU003474};
KW Membrane {ECO:0000256|SAM:Phobius};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723,
KW ECO:0000256|RuleBase:RU003474};
KW Reference proteome {ECO:0000313|Proteomes:UP000015453};
KW Transcription {ECO:0000256|RuleBase:RU003474};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00472}.
FT TRANSMEM 407..424
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 84..136
FT /note="TFIIS-type"
FT /evidence="ECO:0000259|PROSITE:PS51133"
FT DOMAIN 155..303
FT /note="UBC core"
FT /evidence="ECO:0000259|PROSITE:PS50127"
FT REGION 320..385
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 320..347
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 352..368
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 369..385
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 441 AA; 49597 MW; 91847A5C41CFCF1D CRC64;
MMVLPIKIPA AGTGVERKGF RDNNILYPKE EKDQKILLYA CRNCDHQEVA ENNCVYRNEI
HHSVGERTQV LQDVAADPTL PRTKSVRCSA CGHGEAVFFQ ATARGEEGMT LFFVCCNPNF
FQLSPQFSCL LPRREREGGI LEEVLMMDKF NRRNPSVLRI MQEIKEMQTN SSDDFMCLPL
EDDIFEWQFA IMGPRDTEFE GGIYHGRIQL PVEYPLKPPS FMLLTPSGRF ETQTKICLSI
SNHHPEHWQP SWSVRTALVA LIAFMPTPPN GALGSLDYTK EERKALAIKS REIVPKYGSP
ERQKLIDEIH EYMLSKTLTV PQGDQESEVQ ASGEVDNNVQ LNPSEDIAEE NAENIPPAEE
EDEINEEASE INSTPNVSHA STSASEQQNL LIKPVTRASP KQADDRILTW AALVLSIAIV
VLLLKKFLNA NGHSGVFLDE S
//