ID TRI13_BOVIN Reviewed; 407 AA.
AC Q32L60; F1MGY4;
DT 18-APR-2012, integrated into UniProtKB/Swiss-Prot.
DT 18-APR-2012, sequence version 2.
DT 24-JAN-2024, entry version 118.
DE RecName: Full=E3 ubiquitin-protein ligase TRIM13;
DE EC=2.3.2.27;
DE AltName: Full=Putative tumor suppressor RFP2;
DE AltName: Full=RING-type E3 ubiquitin transferase TRIM13 {ECO:0000305};
DE AltName: Full=Ret finger protein 2;
DE AltName: Full=Tripartite motif-containing protein 13;
GN Name=TRIM13; Synonyms=RFP2;
OS Bos taurus (Bovine).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae;
OC Bovinae; Bos.
OX NCBI_TaxID=9913;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Hereford;
RX PubMed=19393038; DOI=10.1186/gb-2009-10-4-r42;
RA Zimin A.V., Delcher A.L., Florea L., Kelley D.R., Schatz M.C., Puiu D.,
RA Hanrahan F., Pertea G., Van Tassell C.P., Sonstegard T.S., Marcais G.,
RA Roberts M., Subramanian P., Yorke J.A., Salzberg S.L.;
RT "A whole-genome assembly of the domestic cow, Bos taurus.";
RL Genome Biol. 10:R42.01-R42.10(2009).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RG NIH - Mammalian Gene Collection (MGC) project;
RL Submitted (NOV-2005) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Endoplasmic reticulum (ER) membrane anchored E3 ligase
CC involved in the retrotranslocation and turnover of membrane and
CC secretory proteins from the ER through a set of processes named ER-
CC associated degradation (ERAD). This process acts on misfolded proteins
CC as well as in the regulated degradation of correctly folded proteins.
CC Enhances ionizing radiation-induced p53/TP53 stability and apoptosis
CC via ubiquitinating MDM2 and AKT1 and decreasing AKT1 kinase activity
CC through MDM2 and AKT1 proteasomal degradation. Regulates ER stress-
CC induced autophagy, and may act as a tumor suppressor. Also plays a role
CC in innate immune response by stimulating NF-kappa-B activity in the
CC TLR2 signaling pathway. Ubiquitinates TRAF6 via the 'Lys-29'-linked
CC polyubiquitination chain resulting in NF-kappa-B activation.
CC Participates as well in T-cell receptor-mediated NF-kappa-B activation.
CC In the presence of TNF, modulates the IKK complex by regulating
CC IKBKG/NEMO ubiquitination leading to the repression of NF-kappa-B.
CC {ECO:0000250|UniProtKB:O60858}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine +
CC [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-
CC cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.;
CC EC=2.3.2.27; Evidence={ECO:0000250|UniProtKB:O60858};
CC -!- PATHWAY: Protein modification; protein ubiquitination.
CC {ECO:0000250|UniProtKB:O60858}.
CC -!- SUBUNIT: Interacts (via C-terminal domain) with VCP. Interacts with
CC AKT1; the interaction ubiquitinates AKT1 and leads to its proteasomal
CC degradation. Interacts with MDM2; the interaction ubiquitinates AKT1
CC and leads to its proteasomal degradation. Interacts with p62/SQSTM1.
CC Interacts with TRAF6. Interacts with IKBKG/NEMO.
CC {ECO:0000250|UniProtKB:O60858}.
CC -!- SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
CC {ECO:0000250|UniProtKB:O60858}; Single-pass membrane protein
CC {ECO:0000250|UniProtKB:O60858}. Note=Concentrates and colocalizes with
CC p62/SQSTM1 and ZFYVE1 at the perinuclear endoplasmic reticulum.
CC {ECO:0000250|UniProtKB:O60858}.
CC -!- DOMAIN: The coiled-coil domain is required for the induction of
CC autophagy during endoplasmic reticulum (ER) stress.
CC {ECO:0000250|UniProtKB:O60858}.
CC -!- DOMAIN: The RING-type zinc finger is required for auto-
CC polyubiquitination. {ECO:0000250|UniProtKB:O60858}.
CC -!- DOMAIN: The C-terminal transmembrane domain is indispensable for the
CC localization to the ER. {ECO:0000250|UniProtKB:O60858}.
CC -!- PTM: Auto-ubiquitinated; requires the RING-type zinc finger. Auto-
CC polyubiquitination leads to proteasomal degradation.
CC {ECO:0000250|UniProtKB:O60858}.
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DR EMBL; DAAA02032918; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; BC109749; AAI09750.1; -; mRNA.
DR RefSeq; NP_001033254.1; NM_001038165.2.
DR RefSeq; XP_005213714.1; XM_005213657.1.
DR RefSeq; XP_005213715.1; XM_005213658.3.
DR AlphaFoldDB; Q32L60; -.
DR SMR; Q32L60; -.
DR STRING; 9913.ENSBTAP00000010745; -.
DR PaxDb; 9913-ENSBTAP00000010745; -.
DR Ensembl; ENSBTAT00000010745.4; ENSBTAP00000010745.3; ENSBTAG00000008173.4.
DR GeneID; 535190; -.
DR KEGG; bta:535190; -.
DR CTD; 10206; -.
DR VEuPathDB; HostDB:ENSBTAG00000008173; -.
DR VGNC; VGNC:36314; TRIM13.
DR eggNOG; KOG2177; Eukaryota.
DR GeneTree; ENSGT00940000159715; -.
DR HOGENOM; CLU_053708_0_0_1; -.
DR InParanoid; Q32L60; -.
DR OMA; NLQVNYS; -.
DR OrthoDB; 5383069at2759; -.
DR TreeFam; TF331669; -.
DR UniPathway; UPA00143; -.
DR Proteomes; UP000009136; Chromosome 12.
DR Bgee; ENSBTAG00000008173; Expressed in spermatid and 105 other cell types or tissues.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0061630; F:ubiquitin protein ligase activity; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0045087; P:innate immune response; IBA:GO_Central.
DR GO; GO:0043123; P:positive regulation of canonical NF-kappaB signal transduction; IBA:GO_Central.
DR GO; GO:0016239; P:positive regulation of macroautophagy; IBA:GO_Central.
DR GO; GO:0016567; P:protein ubiquitination; IBA:GO_Central.
DR GO; GO:0030433; P:ubiquitin-dependent ERAD pathway; IBA:GO_Central.
DR CDD; cd19767; Bbox2_TRIM13_C-XI; 1.
DR CDD; cd16762; RING-HC_TRIM13_C-V; 1.
DR Gene3D; 3.30.160.60; Classic Zinc Finger; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR027370; Znf-RING_euk.
DR InterPro; IPR000315; Znf_B-box.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR017907; Znf_RING_CS.
DR PANTHER; PTHR24103; E3 UBIQUITIN-PROTEIN LIGASE TRIM; 1.
DR PANTHER; PTHR24103:SF609; E3 UBIQUITIN-PROTEIN LIGASE TRIM13; 1.
DR Pfam; PF00643; zf-B_box; 1.
DR Pfam; PF13445; zf-RING_UBOX; 1.
DR SMART; SM00336; BBOX; 1.
DR SMART; SM00184; RING; 1.
DR SUPFAM; SSF57845; B-box zinc-binding domain; 1.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS50119; ZF_BBOX; 1.
DR PROSITE; PS00518; ZF_RING_1; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; Endoplasmic reticulum; Immunity; Innate immunity; Membrane;
KW Metal-binding; Reference proteome; Transferase; Transmembrane;
KW Transmembrane helix; Ubl conjugation; Ubl conjugation pathway; Zinc;
KW Zinc-finger.
FT CHAIN 1..407
FT /note="E3 ubiquitin-protein ligase TRIM13"
FT /id="PRO_0000416763"
FT TRANSMEM 316..336
FT /note="Helical"
FT /evidence="ECO:0000255"
FT ZN_FING 10..58
FT /note="RING-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00175"
FT ZN_FING 89..131
FT /note="B box-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00024"
FT COILED 172..200
FT /evidence="ECO:0000255"
FT BINDING 94
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00024"
FT BINDING 97
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00024"
FT BINDING 117
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00024"
FT BINDING 123
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00024"
FT CONFLICT 55
FT /note="P -> H (in Ref. 2; AAI09750)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 407 AA; 47078 MW; F56BB27F25EB7C9C CRC64;
MELLEEDLTC PICCSLFDDP RVLPCSHNFC KKCLEGILEG NVRNSLWRSS PFKCPTCRKE
TSATGVNSLQ VNYSLKGIVE KYNKIKVSPK MPVCKGHLGQ PLNIFCLTDM QLICGICATR
GEHTKHVFCS IEDAYAQERD AFESLFQSFE TWRRGDALSR LDTLETSKRK SLQLLTKDSD
KVKEFFEKLQ YTLDQKKNEI LSDFETMKLA VMQAYDPEIN KLNTILQEQR MAFNIAEAFK
DVSEPIIFLQ QMQEFREKIK VIKETPLPPS NLPSSPLMKN FDTSQWEDIK LVDVDKLSLP
QDTGTFISKI PWRLYPLFVV VILLGLLIFF SPTMFLEWSL FDEIATWKDN LSNFSSYLTR
SADFVEQSVF YWEQLTDGLF IFSERLKSFT LVVLNNVAEF VCKYKLL
//
