ID U1ZYB3_9PSED Unreviewed; 1125 AA.
AC U1ZYB3;
DT 13-NOV-2013, integrated into UniProtKB/TrEMBL.
DT 13-NOV-2013, sequence version 1.
DT 24-JAN-2024, entry version 46.
DE SubName: Full=Transcription-repair coupling factor {ECO:0000313|EMBL:ERI52078.1};
DE Flags: Fragment;
GN ORFNames=N878_20210 {ECO:0000313|EMBL:ERI52078.1};
OS Pseudomonas sp. EGD-AK9.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
OC Pseudomonadaceae; Pseudomonas.
OX NCBI_TaxID=1386078 {ECO:0000313|EMBL:ERI52078.1, ECO:0000313|Proteomes:UP000016488};
RN [1] {ECO:0000313|EMBL:ERI52078.1, ECO:0000313|Proteomes:UP000016488}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=EGD-Ak9 {ECO:0000313|Proteomes:UP000016488};
RA Kapley A., Sagarkar S., Bhardwaj P., Qureshi A., Khardenavis A.,
RA Purohit H.J.;
RT "Indian agricultural soil isolates capable of pesticide degradation.";
RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:ERI52078.1}.
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DR EMBL; AVOF01000243; ERI52078.1; -; Genomic_DNA.
DR RefSeq; WP_021444011.1; NZ_AVOF01000243.1.
DR AlphaFoldDB; U1ZYB3; -.
DR PATRIC; fig|1386078.3.peg.2407; -.
DR Proteomes; UP000016488; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0003684; F:damaged DNA binding; IEA:InterPro.
DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
DR CDD; cd17991; DEXHc_TRCF; 1.
DR CDD; cd18810; SF2_C_TRCF; 1.
DR Gene3D; 2.40.10.170; -; 1.
DR Gene3D; 3.40.50.11140; -; 1.
DR Gene3D; 3.40.50.11180; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR Gene3D; 3.30.2060.10; Penicillin-binding protein 1b domain; 1.
DR Gene3D; 3.90.1150.50; Transcription-repair-coupling factor, D7 domain; 1.
DR HAMAP; MF_00969; TRCF; 1.
DR InterPro; IPR003711; CarD-like/TRCF_RID.
DR InterPro; IPR036101; CarD-like/TRCF_RID_sf.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR004576; Mfd.
DR InterPro; IPR048635; MFD_D3.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR047112; RecG/Mfd.
DR InterPro; IPR037235; TRCF-like_C_D7.
DR InterPro; IPR005118; TRCF_C.
DR InterPro; IPR041471; UvrB_inter.
DR NCBIfam; TIGR00580; mfd; 1.
DR PANTHER; PTHR47964; ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC; 1.
DR PANTHER; PTHR47964:SF1; ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC; 1.
DR Pfam; PF02559; CarD_TRCF_RID; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF21132; MFD_D3; 1.
DR Pfam; PF03461; TRCF; 1.
DR Pfam; PF17757; UvrB_inter; 1.
DR SMART; SM01058; CarD_TRCF; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00982; TRCF; 1.
DR SUPFAM; SSF141259; CarD-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 4.
DR SUPFAM; SSF143517; TRCF domain-like; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW DNA damage {ECO:0000256|ARBA:ARBA00022763};
KW DNA repair {ECO:0000256|ARBA:ARBA00023204};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Helicase {ECO:0000256|ARBA:ARBA00022806};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741}.
FT DOMAIN 591..752
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 773..927
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:ERI52078.1"
SQ SEQUENCE 1125 AA; 125680 MW; D54A605B23F454D1 CRC64;
AALPLAIAEA ASAAGRLTLV LTEGSQSAER LQEELAFFAP DLPVLHFPDW ETLPYDVFSP
HQDIISQRIA ALYRLPQLTR GILVVPITTA LHRLAPKRFL LGSSLVLDVG QKLDAPQMRT
RLEAAGYRCV DTVYEHGEFA VRGALIDLFP MGSDTPYRID LFDDEIETLR TFDPETQRSV
DKVESVRLLP AREFPLEKKA VSDFRGRFRE RFDVDFRRCP IYQDLSSGIT PAGIEYYLPL
FFEETDTLFD YLPGDTQVFS LPGIEKAAEH FWTDARSRYE DRRVDPERPL LPPADIFLPV
EDCFARLKSW PRIVVNPEDI EPGVGQTRFD AKALPDLAIQ AKAGEPLAAL RRFIEEYPGR
VLFCAESAGR REVLLELLAR LKLKPKEVEG WPAFVASHER LGICIAPLDE GLLLDDLALI
AESPLFGQRV MQRRRREKGR DGGDNVIKNL TELREGAPVV HIDHGVGRYL GLVTMEFDGQ
AAEFLALMYA EEAKLYVPVA SLHLIARYTG SDDALAPLHR LGSETWQKAK RKAAEQVRDV
AAELLDIYAR RAAREGFAFQ DPALDYASFS AGFPFEETPD QQAAIDAVRG DMLAGKPMDR
LICGDVGFGK TEVAMRAAFI AVHSGKQVAV LVPTTLLAQQ HYNSFRDRFA DWPVKVEVMS
RFKSAKEVEG AVQQLAEGKV DIVIGTHKLL QDDVKFHNLG LVIIDEEHRF GVRQKEQLKA
LRSEVDILTL TATPIPRTLN MAVAGMRDLS IIATPPARRL SVRTFVMESN QPTIKEALLR
ELLRGGQVYY LHNDVKTIDK CAADLAKLVP EARIGIGHGQ MRERELEQVM SDFYHKRFNV
LVASTIIETG IDVPSANTII IDRADKFGLA QLHQLRGRVG RSHHQAYAYL LTPPRKQMTD
DAQKRLEAIS NAQDLGAGFV LATHDLEIRG AGELLGDGQS GQIQAVGFTL YMEMLERAVK
AIQKGEQPNL DQPLGGGPEI NLRVPALIPE DYLPDVHSRL ILYKRIANAT DEDGLKELQV
EMIDRFGLLP EPTKHLMRLT LLKLQADKLG IVKIDAGPQG GRIEFAAETC VDPLTLIKLI
QAQPKRYKFE GATVFKIQVP MERAEERFNT LEALLERLAP QASST
//
