ID   U3JLU7_FICAL            Unreviewed;      1064 AA.
AC   U3JLU7;
DT   13-NOV-2013, integrated into UniProtKB/TrEMBL.
DT   29-SEP-2021, sequence version 2.
DT   27-MAR-2024, entry version 68.
DE   RecName: Full=H/ACA ribonucleoprotein complex non-core subunit NAF1 {ECO:0000256|ARBA:ARBA00021438};
OS   Ficedula albicollis (Collared flycatcher) (Muscicapa albicollis).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
OC   Coelurosauria; Aves; Neognathae; Passeriformes; Muscicapidae; Ficedula.
OX   NCBI_TaxID=59894 {ECO:0000313|Ensembl:ENSFALP00000003751.2, ECO:0000313|Proteomes:UP000016665};
RN   [1] {ECO:0000313|Ensembl:ENSFALP00000003751.2, ECO:0000313|Proteomes:UP000016665}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=23103876; DOI=10.1038/nature11584;
RA   Ellegren H., Smeds L., Burri R., Olason P.I., Backstrom N., Kawakami T.,
RA   Kunstner A., Makinen H., Nadachowska-Brzyska K., Qvarnstrom A., Uebbing S.,
RA   Wolf J.B.;
RT   "The genomic landscape of species divergence in Ficedula flycatchers.";
RL   Nature 491:756-760(2012).
RN   [2] {ECO:0000313|Ensembl:ENSFALP00000003751.2}
RP   IDENTIFICATION.
RG   Ensembl;
RL   Submitted (SEP-2023) to UniProtKB.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC   -!- SIMILARITY: Belongs to the NAF1 family.
CC       {ECO:0000256|ARBA:ARBA00009801}.
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DR   AlphaFoldDB; U3JLU7; -.
DR   STRING; 59894.ENSFALP00000003751; -.
DR   Ensembl; ENSFALT00000003766.2; ENSFALP00000003751.2; ENSFALG00000003590.2.
DR   eggNOG; KOG0507; Eukaryota.
DR   GeneTree; ENSGT00390000004697; -.
DR   HOGENOM; CLU_003619_1_1_1; -.
DR   Proteomes; UP000016665; Chromosome 4.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0005732; C:sno(s)RNA-containing ribonucleoprotein complex; IEA:InterPro.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0000493; P:box H/ACA snoRNP assembly; IEA:InterPro.
DR   GO; GO:0001522; P:pseudouridine synthesis; IEA:InterPro.
DR   GO; GO:0042254; P:ribosome biogenesis; IEA:InterPro.
DR   Gene3D; 2.40.10.230; Probable tRNA pseudouridine synthase domain; 1.
DR   InterPro; IPR038664; Gar1/Naf1_Cbf5-bd_sf.
DR   InterPro; IPR007504; H/ACA_rnp_Gar1/Naf1.
DR   InterPro; IPR040309; Naf1.
DR   InterPro; IPR009000; Transl_B-barrel_sf.
DR   PANTHER; PTHR31633; H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1; 1.
DR   PANTHER; PTHR31633:SF1; H_ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1; 1.
DR   Pfam; PF04410; Gar1; 1.
DR   PRINTS; PR01217; PRICHEXTENSN.
DR   SUPFAM; SSF50447; Translation proteins; 1.
PE   3: Inferred from homology;
KW   Phosphoprotein {ECO:0000256|ARBA:ARBA00022553};
KW   Reference proteome {ECO:0000313|Proteomes:UP000016665}.
FT   REGION          1..117
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          615..743
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          870..933
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          947..966
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1042..1064
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1..33
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        44..117
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        615..681
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        711..729
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        886..901
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        918..933
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1042..1057
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1064 AA;  109812 MW;  6F066B0FD840BFA3 CRC64;
     MPPEPGAAVP LEPQVAVPPE PGATVPLEPL VAVPPEPGAT VHLEPGADPP PPPPPPPPPP
     PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP
     PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP
     PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP
     PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP
     PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP
     PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP
     PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP
     PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP
     PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP
     PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP PPPPPPPPPP
     PPPPPPPPPP PPPPPPPPAA VAERRGARCA CPPPPAPVFH PLEFAPSHHS DSDSDSSSTT
     FSSSSSSVSD EDDHPNEKNN RSYCIRTKDE LPIEELPPVE DLSIILPDNV ELKMFGTVSS
     IIDQLVIIES LKGLPPVNEE SIIFKEDRQA AGKIFEIFGP VSHPFYVIRF NNSQHIKEKG
     INVQDSMYFA PSVEDFTQYI FAEKLKQEKG SDASWKNDQE PPPEVLDFSD DEKEREAKEK
     KKKPQSRGRK KARSETFPSS ENNELLQSVQ RPASSYSRGY YGRGFSFSRD RFPPPSGPRG
     FFRPNVRPPQ LYFSDRRIYQ ESPVFPPPPR RENPMMQQYA FPPPDFGYLS DAHHFYPLPP
     NMNMMWGGPN MYNSCYSFLP PPPPPPPPPP PPPLDSHPPH FRHY
//