ID U5D9E5_AMBTC Unreviewed; 685 AA.
AC U5D9E5;
DT 11-DEC-2013, integrated into UniProtKB/TrEMBL.
DT 11-DEC-2013, sequence version 1.
DT 27-MAR-2024, entry version 39.
DE RecName: Full=BED-type domain-containing protein {ECO:0000259|PROSITE:PS50808};
GN ORFNames=AMTR_s00067p00136180 {ECO:0000313|EMBL:ERN18855.1};
OS Amborella trichopoda.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella.
OX NCBI_TaxID=13333 {ECO:0000313|EMBL:ERN18855.1, ECO:0000313|Proteomes:UP000017836};
RN [1] {ECO:0000313|Proteomes:UP000017836}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=24357323;
RG Amborella Genome Project;
RT "The Amborella genome and the evolution of flowering plants.";
RL Science 342:1241089-1241089(2013).
CC -!- SUBUNIT: Homodimer. {ECO:0000256|ARBA:ARBA00011738}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; KI392078; ERN18855.1; -; Genomic_DNA.
DR AlphaFoldDB; U5D9E5; -.
DR STRING; 13333.U5D9E5; -.
DR EnsemblPlants; ERN18855; ERN18855; AMTR_s00067p00136180.
DR Gramene; ERN18855; ERN18855; AMTR_s00067p00136180.
DR eggNOG; KOG1121; Eukaryota.
DR HOGENOM; CLU_009123_1_3_1; -.
DR OMA; YEEYIRM; -.
DR Proteomes; UP000017836; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0009791; P:post-embryonic development; IEA:UniProt.
DR InterPro; IPR045259; DAYSLEEPER-like.
DR InterPro; IPR025525; hAT-like_transposase_RNase-H.
DR InterPro; IPR008906; HATC_C_dom.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR003656; Znf_BED.
DR InterPro; IPR036236; Znf_C2H2_sf.
DR PANTHER; PTHR23272; BED FINGER-RELATED; 1.
DR PANTHER; PTHR23272:SF52; ZINC FINGER BED DOMAIN-CONTAINING PROTEIN DAYSLEEPER; 1.
DR Pfam; PF05699; Dimer_Tnp_hAT; 1.
DR Pfam; PF14372; hAT-like_RNase-H; 1.
DR Pfam; PF02892; zf-BED; 1.
DR SMART; SM00614; ZnF_BED; 1.
DR SUPFAM; SSF57667; beta-beta-alpha zinc fingers; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50808; ZF_BED; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000017836};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00027}.
FT DOMAIN 64..117
FT /note="BED-type"
FT /evidence="ECO:0000259|PROSITE:PS50808"
SQ SEQUENCE 685 AA; 78490 MW; 26103C666792DA3B CRC64;
MERSIKSKLD RSPVSSFSTI YAQIRVFPYV KFCGVPGIYV IIVSVNEHYI ASIKMSHPLP
SKRKTISSVW DEFEKVRSED GSVKAACKHC HRNLVGSSAH GTSHLKRHLG RCAKRVHIGS
GQQLVVTCIK KGEASSVNFK FDQGRSRYDL AKMILLHEYP SSMVEHTTFR TFVRNLQPLF
SMVSPSTIES DIIEIYKKEK KKLYEELEKI PSRISLSANI WSSCQNLEYL CLIAHYIDDA
WVLQKQILSF VNLPSRTGGA IAEVLLDLLS QWNVDKKLFS ITLNSASYND VAASSLRSRL
SRNSSLPLEG KIFHLCCCSH VVNLMVQDGL EVIQEVLQKI RESIKYVKTS HVRQERFNEI
INQLGIQSKQ NIFLDVPTRW NSTYHMLDVT LELREAFSCF AQCDSMCNMV PSEDEWERVK
EICDCLKLFY DITNTFLGSK YPTANLYFPE VYQMHLRLVE WSMSLNKHIS SMAIKMKEKF
DKYWKISNLV LAIAVVIDPR FKLKFVEYSY SQIYGNDAEH HIRMVRQGVY DLCNEYESKE
PLASNSESSL AVSASTSSGG VDTHGKLWAM EFEKFVRESS SNQARKSELD RYLEEPIFPR
NLDFNIRNWW QLNAPRFPTL SKMARDILGI PVSTVTSDST FDIGGQVLDQ YRSSLLPETI
QALMCAQDWL WNELKGGKSS SIVAW
//
