ID U7UCS5_9FIRM Unreviewed; 510 AA.
AC U7UCS5;
DT 22-JAN-2014, integrated into UniProtKB/TrEMBL.
DT 22-JAN-2014, sequence version 1.
DT 24-JAN-2024, entry version 44.
DE RecName: Full=Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335};
DE Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};
DE EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};
GN Name=rny {ECO:0000256|HAMAP-Rule:MF_00335,
GN ECO:0000313|EMBL:ERT56669.1};
GN ORFNames=HMPREF1253_1534 {ECO:0000313|EMBL:ERT56669.1};
OS Peptoniphilus sp. BV3C26.
OC Bacteria; Bacillota; Tissierellia; Tissierellales; Peptoniphilaceae;
OC Peptoniphilus.
OX NCBI_TaxID=1111134 {ECO:0000313|EMBL:ERT56669.1, ECO:0000313|Proteomes:UP000017105};
RN [1] {ECO:0000313|EMBL:ERT56669.1, ECO:0000313|Proteomes:UP000017105}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=BV3C26 {ECO:0000313|EMBL:ERT56669.1,
RC ECO:0000313|Proteomes:UP000017105};
RA Durkin A.S., Haft D.R., McCorrison J., Torralba M., Gillis M., Haft D.H.,
RA Methe B., Sutton G., Nelson K.E.;
RL Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Endoribonuclease that initiates mRNA decay.
CC {ECO:0000256|HAMAP-Rule:MF_00335}.
CC -!- SIMILARITY: Belongs to the RNase Y family. {ECO:0000256|HAMAP-
CC Rule:MF_00335}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:ERT56669.1}.
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DR EMBL; AWXB01000065; ERT56669.1; -; Genomic_DNA.
DR RefSeq; WP_023056306.1; NZ_AWXB01000065.1.
DR AlphaFoldDB; U7UCS5; -.
DR STRING; 1111134.HMPREF1253_1534; -.
DR PATRIC; fig|1111134.3.peg.1733; -.
DR eggNOG; COG1418; Bacteria.
DR OrthoDB; 9803205at2; -.
DR Proteomes; UP000017105; Unassembled WGS sequence.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-UniRule.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0004521; F:RNA endonuclease activity; IEA:UniProtKB-UniRule.
DR GO; GO:0006402; P:mRNA catabolic process; IEA:UniProtKB-UniRule.
DR CDD; cd00077; HDc; 1.
DR CDD; cd22431; KH-I_RNaseY; 1.
DR Gene3D; 1.10.3210.10; Hypothetical protein af1432; 1.
DR Gene3D; 3.30.1370.10; K Homology domain, type 1; 1.
DR HAMAP; MF_00335; RNase_Y; 1.
DR InterPro; IPR003607; HD/PDEase_dom.
DR InterPro; IPR006674; HD_domain.
DR InterPro; IPR006675; HDIG_dom.
DR InterPro; IPR004087; KH_dom.
DR InterPro; IPR004088; KH_dom_type_1.
DR InterPro; IPR036612; KH_dom_type_1_sf.
DR InterPro; IPR017705; Ribonuclease_Y.
DR InterPro; IPR022711; RNase_Y_N.
DR NCBIfam; TIGR00277; HDIG; 1.
DR NCBIfam; TIGR03319; RNase_Y; 1.
DR PANTHER; PTHR12826; RIBONUCLEASE Y; 1.
DR PANTHER; PTHR12826:SF15; RIBONUCLEASE Y; 1.
DR Pfam; PF01966; HD; 1.
DR Pfam; PF00013; KH_1; 1.
DR Pfam; PF12072; RNase_Y_N; 1.
DR SMART; SM00471; HDc; 1.
DR SMART; SM00322; KH; 1.
DR SUPFAM; SSF54791; Eukaryotic type KH-domain (KH-domain type I); 1.
DR SUPFAM; SSF109604; HD-domain/PDEase-like; 1.
DR PROSITE; PS51831; HD; 1.
DR PROSITE; PS50084; KH_TYPE_1; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Endonuclease {ECO:0000256|ARBA:ARBA00022759, ECO:0000256|HAMAP-
KW Rule:MF_00335};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_00335};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722, ECO:0000256|HAMAP-Rule:MF_00335};
KW Reference proteome {ECO:0000313|Proteomes:UP000017105};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|HAMAP-
KW Rule:MF_00335}.
FT DOMAIN 326..419
FT /note="HD"
FT /evidence="ECO:0000259|PROSITE:PS51831"
FT COILED 49..133
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 510 AA; 57231 MW; EB75CB959458F1BA CRC64;
MPEIIKILLS AIISLGLGYF VRKYIAENKV GKAEEIANKI VIDAEHTAES KKKELLVEAK
EEIHKMRAEV ESENKLRRAE LSQLETRVLA REESIEKKSN SLEKKEEKLN RKLEEAKAKN
EEAESLIEKR NLELQRVSGL SVEEGKRILL SELEKDVVHE SAQIIRENEL RIKDESQKYA
RDIIVQAIQR CAADTVAENT VSVVSLPNDE MKGRIIGREG RNIRAIESLT GVDLIIDDTP
EAVVLSCFDP IRREVARIAI EKLVSDGRIH PTRIEETVER AKKEIEVTIK ESGEQAAYDA
GVHGLHPELI KYLGRLKYRT SYGQNVLKHS VEVAQIAGII ASELGADVKI AKRGGLLHDL
GKSIDHEVEG PHVDLGVDLA RRYKEPESVV HTIEAHHNDV EPSTLEAVIV QAADAISAAR
PGARRETVES YIKRLEKLEE IANEYEGIEK SYAVQAGREI RIIVKPEMIS ESEIIVTARN
IAKQVEAELD FPGQIKVNVI RETRAVEYAK
//
