ID V4KDR2_EUTSA Unreviewed; 469 AA.
AC V4KDR2;
DT 22-JAN-2014, integrated into UniProtKB/TrEMBL.
DT 22-JAN-2014, sequence version 1.
DT 27-MAR-2024, entry version 33.
DE RecName: Full=Rhamnogalacturonan lyase domain-containing protein {ECO:0000259|Pfam:PF14686};
DE Flags: Fragment;
GN ORFNames=EUTSA_v100070381mg {ECO:0000313|EMBL:ESQ35875.1};
OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema.
OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ35875.1, ECO:0000313|Proteomes:UP000030689};
RN [1] {ECO:0000313|EMBL:ESQ35875.1, ECO:0000313|Proteomes:UP000030689}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23518688; DOI=10.3389/fpls.2013.00046;
RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., Jenkins J.,
RA Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A.,
RA Mitchell-Olds T., Schumaker K.S., Wang X.;
RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum.";
RL Front. Plant Sci. 4:46-46(2013).
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DR EMBL; KI517683; ESQ35875.1; -; Genomic_DNA.
DR RefSeq; XP_006417522.1; XM_006417459.1.
DR AlphaFoldDB; V4KDR2; -.
DR STRING; 72664.V4KDR2; -.
DR EnsemblPlants; ESQ35875; ESQ35875; EUTSA_v100070381mg.
DR GeneID; 18993884; -.
DR Gramene; ESQ35875; ESQ35875; EUTSA_v100070381mg.
DR KEGG; eus:EUTSA_v100070381m; -.
DR eggNOG; ENOG502QQM5; Eukaryota.
DR OMA; FITQTRA; -.
DR OrthoDB; 641596at2759; -.
DR Proteomes; UP000030689; Unassembled WGS sequence.
DR GO; GO:0030246; F:carbohydrate binding; IEA:InterPro.
DR GO; GO:0003824; F:catalytic activity; IEA:InterPro.
DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro.
DR CDD; cd10316; RGL4_M; 1.
DR CDD; cd10320; RGL4_N; 1.
DR Gene3D; 2.70.98.10; -; 1.
DR Gene3D; 2.60.40.1120; Carboxypeptidase-like, regulatory domain; 1.
DR InterPro; IPR013784; Carb-bd-like_fold.
DR InterPro; IPR011013; Gal_mutarotase_sf_dom.
DR InterPro; IPR014718; GH-type_carb-bd.
DR InterPro; IPR029413; RG-lyase_II.
DR InterPro; IPR010325; Rhamnogal_lyase.
DR PANTHER; PTHR32018:SF14; RHAMNOGALACTURONAN ENDOLYASE; 1.
DR PANTHER; PTHR32018; RHAMNOGALACTURONATE LYASE FAMILY PROTEIN; 1.
DR Pfam; PF14686; fn3_3; 1.
DR Pfam; PF06045; Rhamnogal_lyase; 1.
DR SUPFAM; SSF74650; Galactose mutarotase-like; 1.
DR SUPFAM; SSF49452; Starch-binding domain-like; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000030689}.
FT DOMAIN 376..448
FT /note="Rhamnogalacturonan lyase"
FT /evidence="ECO:0000259|Pfam:PF14686"
FT NON_TER 469
FT /evidence="ECO:0000313|EMBL:ESQ35875.1"
SQ SEQUENCE 469 AA; 53407 MW; B8BB0A32EF8ED068 CRC64;
MFLSLFEIAI SQNQSPDPES TQVLQLHYED RHVVLDNGIF QLTLSSPEGF VTGIRYNNIE
NVLAYNGGEH DRGYWDLVWN FPGKKTKKTK GTLDRIEATK MEVITQSDEK IEISFSRTWN
ASSTLAVPVN IDKRFVMLRN SSGFYTYAIF ERLKGWPAVE LDNIRLAFKL NKDKFHYMAI
SDERQRYMPQ ADDRIPPRGK PLAYPEAVQL LDPTNPEFKG EVDDKYAYSM ESKDIKVHGW
ISTNDSVGFW QITPSNEFRS SGPLKQFLGS HVGPTNLAIF HSTHYVGADL IMKFEEGEAW
KKVFGPVFIY LNSFPQGVDP LLLWHQAKNQ TKIEEQKWPY NFTTSSDFPA SDQRGCVSGR
FLVRDRYISS EDIPANGSYV GLAAPGDAGS WQKEYKGYQF WSKADEKGYF SINNVRSGRY
NLYAFALGFI GDYHNDTVFD ISPGSNISLG DLVYEPPRDG VTLWEIGVP
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