ID V4LPT1_EUTSA Unreviewed; 1509 AA.
AC V4LPT1;
DT 22-JAN-2014, integrated into UniProtKB/TrEMBL.
DT 22-JAN-2014, sequence version 1.
DT 27-MAR-2024, entry version 39.
DE RecName: Full=Intron-binding protein aquarius N-terminal domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=EUTSA_v10016138mg {ECO:0000313|EMBL:ESQ52555.1};
OS Eutrema salsugineum (Saltwater cress) (Sisymbrium salsugineum).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema.
OX NCBI_TaxID=72664 {ECO:0000313|EMBL:ESQ52555.1, ECO:0000313|Proteomes:UP000030689};
RN [1] {ECO:0000313|EMBL:ESQ52555.1, ECO:0000313|Proteomes:UP000030689}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23518688; DOI=10.3389/fpls.2013.00046;
RA Yang R., Jarvis D.E., Chen H., Beilstein M.A., Grimwood J., Jenkins J.,
RA Shu S., Prochnik S., Xin M., Ma C., Schmutz J., Wing R.A.,
RA Mitchell-Olds T., Schumaker K.S., Wang X.;
RT "The Reference Genome of the Halophytic Plant Eutrema salsugineum.";
RL Front. Plant Sci. 4:46-46(2013).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PIRNR:PIRNR038901}.
CC -!- SIMILARITY: Belongs to the CWF11 family.
CC {ECO:0000256|PIRNR:PIRNR038901}.
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DR EMBL; KI517385; ESQ52555.1; -; Genomic_DNA.
DR RefSeq; XP_006411102.1; XM_006411039.1.
DR STRING; 72664.V4LPT1; -.
DR EnsemblPlants; ESQ52555; ESQ52555; EUTSA_v10016138mg.
DR GeneID; 18026676; -.
DR Gramene; ESQ52555; ESQ52555; EUTSA_v10016138mg.
DR KEGG; eus:EUTSA_v10016138mg; -.
DR eggNOG; KOG1806; Eukaryota.
DR OMA; RGRENNF; -.
DR OrthoDB; 7041at2759; -.
DR Proteomes; UP000030689; Unassembled WGS sequence.
DR GO; GO:0005681; C:spliceosomal complex; IEA:InterPro.
DR GO; GO:0004386; F:helicase activity; IEA:InterPro.
DR GO; GO:0003729; F:mRNA binding; IEA:EnsemblPlants.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IEA:InterPro.
DR CDD; cd17935; EEXXQc_AQR; 1.
DR CDD; cd18808; SF1_C_Upf1; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR048966; Aquarius_b-barrel.
DR InterPro; IPR048967; Aquarius_insert.
DR InterPro; IPR032174; Aquarius_N.
DR InterPro; IPR026300; CWF11_fam.
DR InterPro; IPR045055; DNA2/NAM7-like.
DR InterPro; IPR041679; DNA2/NAM7-like_C.
DR InterPro; IPR041677; DNA2/NAM7_AAA_11.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR047187; SF1_C_Upf1.
DR PANTHER; PTHR10887; DNA2/NAM7 HELICASE FAMILY; 1.
DR PANTHER; PTHR10887:SF5; RNA HELICASE AQUARIUS; 1.
DR Pfam; PF13086; AAA_11; 1.
DR Pfam; PF13087; AAA_12; 1.
DR Pfam; PF16399; Aquarius_N_1st; 1.
DR Pfam; PF21143; Aquarius_N_2nd; 1.
DR Pfam; PF21144; Aquarius_N_3rd; 1.
DR PIRSF; PIRSF038901; AQR_cwf11; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
PE 3: Inferred from homology;
KW mRNA processing {ECO:0000256|PIRNR:PIRNR038901};
KW mRNA splicing {ECO:0000256|PIRNR:PIRNR038901};
KW Nucleus {ECO:0000256|PIRNR:PIRNR038901};
KW Reference proteome {ECO:0000313|Proteomes:UP000030689}.
FT DOMAIN 55..460
FT /note="RNA helicase aquarius N-terminal"
FT /evidence="ECO:0000259|Pfam:PF16399"
FT DOMAIN 542..711
FT /note="RNA helicase aquarius beta-barrel"
FT /evidence="ECO:0000259|Pfam:PF21143"
FT DOMAIN 759..859
FT /note="RNA helicase aquarius insertion"
FT /evidence="ECO:0000259|Pfam:PF21144"
FT DOMAIN 880..1168
FT /note="DNA2/NAM7 helicase helicase"
FT /evidence="ECO:0000259|Pfam:PF13086"
FT DOMAIN 1177..1369
FT /note="DNA2/NAM7 helicase-like C-terminal"
FT /evidence="ECO:0000259|Pfam:PF13087"
FT REGION 21..41
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1458..1509
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1465..1491
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1509 AA; 172952 MW; B39B12CB74FBF0BC CRC64;
MTKVYGTGTY DFKRHRVAEY PLELPNHPTE KPLESKPGSN LPSSITLSEI QQDRLTKIAE
ETWIKTGGKL PEKPFDPEVV KEIYVTELKV TSGRKPVPLQ RVMILEVSQY LENYLWPNFD
PETATFEHVM SMILMINEKF RENVAAWICF HDREDLFKEF LQKVLRLKEG RDLTIAEKTN
YLVFMINAFQ SLEDSVVNET VLSLAGLQSW HSLSYGRFQM ELCLQPDLIK KWKRSSKKWA
AEAMSKGEQF DPSSLPEANF VRGLIEEFVE VLDHRVFADE VDDTVGSHLV DDSSVLYCER
FMEFLIDMLN QLPTRRYLRP LVADIAVVAK CRLSVLYKHE KGKLFAQLVD LLQFYEKFEI
KDHDGTQLTD DEALQFHYDR FMAFQLLAFK KIPKLRDLSL ANIGSVHKSS DLRRRLSALS
LEDLRDVVCS KLKLVSRHDP WADSKDFLIE VVVSSFEKQQ SQKEAINALP LYPNEQIMWD
ESVIPSINYS GEGCLALPKL NLQFLTLHDY LLRNFNLFRL ESTYEIREDI QEAVPHLLAH
INNEGETAFR GWSRMAVPIN KFQIAQVKQP NIGEEKPSSV TAEVTFSIKS YRNQIRSEWN
SLKEHDVLFL LCIRPSFEPL GAEEADKATV PQRLGLQYVR GCEIIDIRDE EGNLMNDFTG
RVKRDEWKPP KGEMRTVTVA LDAAQYHIDV TDIAEKGAED VYSTFNVLMR RKPKENNFKA
ILESIRDLMN EYCIVPEWLH NVFLGYGNPS AAQWPNMPNL LETVDFKDTF LDANHLSESF
PDYEVSFVNA DGAEVLDPRP PFRITLPKTL KGNANALSGN KISEVNPADN VDAVDVSPKE
KLIVEAYTPP DPGPYPQDQP KQNSVKFTPT QVGAIISGIQ PGLTMVVGPP GTGKTDTAVQ
ILNVLYHNCP SQRTLIITHS NQALNDLFEK IMERDVPARY LLRLGQGEQE LATDLDFSRQ
GRVNAMLVRR LELLNEVERL ARSLQLPEDV GYTCETAGYF WLLHVYSRWE LFLAACAGNE
NNPSFVQDRF PFKDFFSDTP KPVFSGESFE KDMRAAKGCF SHLKTVFQEL EECRAFELLK
STADRANYLM TKQAKIVAMT CTHAALKRRD FLQLGFKYDN LLMEESAQIL EIETFIPMLL
QRQEDGHARL KRCILIGDHH QLPPVVKNMA FQKYSHMDQS LFTRFVRLGI PYIELNAQGR
ARPSLAKLYN WRYRDLGDLS IVKEAPIFHR ANAGFSYEYQ LINVPDYEGK GESTPSPWFY
QNQGEAEYIV SVYIYMRLLG YPANKISILT TYNGQKLLIR DVINRRCVPY AFIGPPSKVT
TVDKFQGQQN DFILLSLVRT RFVGHLRDVR RLVVAMSRAR LGLYVFCRRS LFEQCYELQP
TFQLLLKRPD RLGLNLSENT TAYTDRAVEE VGNPYLVHDA QEMAHIVHDR INEFYKAQGV
YEQYQNYMPQ IEDGNQDMES DAAVGADGES EKKMQPDLDG VADDESSKEV VGMEVDNGFS
SENGKADEN
//
