ID V6LY42_9EUKA Unreviewed; 286 AA.
AC V6LY42;
DT 19-FEB-2014, integrated into UniProtKB/TrEMBL.
DT 19-FEB-2014, sequence version 1.
DT 13-SEP-2023, entry version 25.
DE SubName: Full=DNA-directed RNA polymerase subunit D {ECO:0000313|EMBL:EST45704.1};
GN ORFNames=SS50377_14275 {ECO:0000313|EMBL:EST45704.1}, SS50377_22136
GN {ECO:0000313|EMBL:KAH0576572.1};
OS Spironucleus salmonicida.
OC Eukaryota; Metamonada; Diplomonadida; Hexamitidae; Hexamitinae;
OC Spironucleus.
OX NCBI_TaxID=348837 {ECO:0000313|EMBL:EST45704.1};
RN [1] {ECO:0000313|EMBL:KAH0576572.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=ATCC 50377 {ECO:0000313|EMBL:KAH0576572.1};
RX PubMed=24516394;
RA Xu F., Jerlstrom-Hultqvist J., Einarsson E., Astvaldsson A., Svard S.G.,
RA Andersson J.O.;
RT "The Genome of Spironucleus salmonicida Highlights a Fish Pathogen Adapted
RT to Fluctuating Environments.";
RL PLoS Genet. 10:E1004053-E1004053(2014).
RN [2] {ECO:0000313|EMBL:EST45704.1}
RP NUCLEOTIDE SEQUENCE.
RA Xu F., Jerlstrom-Hultqvist J., Einarsson E., Astvaldsson A., Svard S.G.,
RA Andersson J.O.;
RT "The Genome of Spironucleus salmonicida Highlights a Fish Pathogen Adapted
RT to Fluctuating Environments.";
RL PLoS Genet. 0:0-0(2014).
RN [3] {ECO:0000313|EMBL:KAH0576572.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=ATCC 50377 {ECO:0000313|EMBL:KAH0576572.1};
RA Xu F., Kurt Z., Jimenez-Gonzalez A., Astvaldsson A., Andersson J.O.,
RA Svard S.G.;
RT "New Spironucleus salmonicida genome in near-complete chromosomes.";
RL Submitted (DEC-2020) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the archaeal Rpo3/eukaryotic RPB3 RNA polymerase
CC subunit family. {ECO:0000256|ARBA:ARBA00025804}.
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DR EMBL; KI546089; EST45704.1; -; Genomic_DNA.
DR EMBL; AUWU02000002; KAH0576572.1; -; Genomic_DNA.
DR AlphaFoldDB; V6LY42; -.
DR EnsemblProtists; EST45704; EST45704; SS50377_14275.
DR VEuPathDB; GiardiaDB:SS50377_22136; -.
DR OrthoDB; 5472982at2759; -.
DR Proteomes; UP000018208; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:InterPro.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR Gene3D; 2.170.120.12; DNA-directed RNA polymerase, insert domain; 1.
DR Gene3D; 3.30.1360.10; RNA polymerase, RBP11-like subunit; 1.
DR HAMAP; MF_00320; RNApol_arch_Rpo3; 1.
DR InterPro; IPR011262; DNA-dir_RNA_pol_insert.
DR InterPro; IPR011263; DNA-dir_RNA_pol_RpoA/D/Rpb3.
DR InterPro; IPR036603; RBP11-like.
DR InterPro; IPR022842; RNAP_Rpo3/Rpb3/RPAC1.
DR InterPro; IPR036643; RNApol_insert_sf.
DR PANTHER; PTHR11800; DNA-DIRECTED RNA POLYMERASE; 1.
DR PANTHER; PTHR11800:SF13; DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC1; 1.
DR Pfam; PF01000; RNA_pol_A_bac; 1.
DR Pfam; PF01193; RNA_pol_L; 1.
DR SMART; SM00662; RPOLD; 1.
DR SUPFAM; SSF56553; Insert subdomain of RNA polymerase alpha subunit; 1.
DR SUPFAM; SSF55257; RBP11-like subunits of RNA polymerase; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW ECO:0000313|EMBL:EST45704.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000018208};
KW Transcription {ECO:0000256|ARBA:ARBA00023163}.
FT DOMAIN 28..280
FT /note="DNA-directed RNA polymerase RpoA/D/Rpb3-type"
FT /evidence="ECO:0000259|SMART:SM00662"
SQ SEQUENCE 286 AA; 32488 MW; 32C612249837E5E4 CRC64;
MQVTNDLVHV IQSEPKQPLI KKLSVGEISQ YLVEGTTPII NTIRRVIIDE TPTIAFDTAV
VSINTSVIPD EVLCHRFAMV PIQVDPRIFS FHEQTITEEN TLVFRLDITA GDEFKTVYSS
DLEWIPFGNQ KQRLNNVRPL IENIPLAKIA HGQKIIVELY AHKGIGKVHA KWSPVSACWF
SMLPQFQYKS KIVNWENRKS FSDTNLKVDC PMNVFDDIED IQLQNCTLCR KCLDIEGLKL
SLDDTRYLLN IETTCSLTGS EILCEALNVI KEKSQLVING LSNQDQ
//
