ID V7AUM1_PHAVU Unreviewed; 1481 AA.
AC V7AUM1;
DT 19-FEB-2014, integrated into UniProtKB/TrEMBL.
DT 19-FEB-2014, sequence version 1.
DT 27-MAR-2024, entry version 55.
DE RecName: Full=Zinc finger CCCH domain-containing protein 19 {ECO:0008006|Google:ProtNLM};
GN ORFNames=PHAVU_009G003300g {ECO:0000313|EMBL:ESW07916.1};
OS Phaseolus vulgaris (Kidney bean) (French bean).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Phaseolus.
OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW07916.1, ECO:0000313|Proteomes:UP000000226};
RN [1] {ECO:0000313|Proteomes:UP000000226}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. G19833 {ECO:0000313|Proteomes:UP000000226};
RX PubMed=24908249; DOI=10.1038/ng.3008;
RA Schmutz J., McClean P.E., Mamidi S., Wu G.A., Cannon S.B., Grimwood J.,
RA Jenkins J., Shu S., Song Q., Chavarro C., Torres-Torres M., Geffroy V.,
RA Moghaddam S.M., Gao D., Abernathy B., Barry K., Blair M., Brick M.A.,
RA Chovatia M., Gepts P., Goodstein D.M., Gonzales M., Hellsten U.,
RA Hyten D.L., Jia G., Kelly J.D., Kudrna D., Lee R., Richard M.M.,
RA Miklas P.N., Osorno J.M., Rodrigues J., Thareau V., Urrea C.A., Wang M.,
RA Yu Y., Zhang M., Wing R.A., Cregan P.B., Rokhsar D.S., Jackson S.A.;
RT "A reference genome for common bean and genome-wide analysis of dual
RT domestications.";
RL Nat. Genet. 46:707-713(2014).
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DR EMBL; CM002296; ESW07916.1; -; Genomic_DNA.
DR RefSeq; XP_007135922.1; XM_007135860.1.
DR STRING; 3885.V7AUM1; -.
DR EnsemblPlants; ESW07916; ESW07916; PHAVU_009G003300g.
DR GeneID; 18618685; -.
DR Gramene; ESW07916; ESW07916; PHAVU_009G003300g.
DR KEGG; pvu:PHAVU_009G003300g; -.
DR eggNOG; KOG1081; Eukaryota.
DR eggNOG; KOG1862; Eukaryota.
DR eggNOG; KOG1946; Eukaryota.
DR OMA; HEFTESW; -.
DR OrthoDB; 50760at2759; -.
DR Proteomes; UP000000226; Chromosome 9.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd19757; Bbox1; 1.
DR CDD; cd00072; GYF; 1.
DR CDD; cd15568; PHD5_NSD; 1.
DR CDD; cd10567; SWIB-MDM2_like; 1.
DR Gene3D; 3.30.1490.40; -; 1.
DR Gene3D; 3.90.70.200; Plus-3 domain; 1.
DR Gene3D; 1.10.245.10; SWIB/MDM2 domain; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR003169; GYF.
DR InterPro; IPR035445; GYF-like_dom_sf.
DR InterPro; IPR004343; Plus-3_dom.
DR InterPro; IPR036128; Plus3-like_sf.
DR InterPro; IPR019835; SWIB_domain.
DR InterPro; IPR036885; SWIB_MDM2_dom_sf.
DR InterPro; IPR003121; SWIB_MDM2_domain.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR13115; UNCHARACTERIZED; 1.
DR PANTHER; PTHR13115:SF29; ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19; 1.
DR Pfam; PF02213; GYF; 1.
DR Pfam; PF03126; Plus-3; 1.
DR Pfam; PF02201; SWIB; 1.
DR SMART; SM00444; GYF; 1.
DR SMART; SM00249; PHD; 1.
DR SMART; SM00719; Plus3; 1.
DR SMART; SM00151; SWIB; 1.
DR SUPFAM; SSF90229; CCCH zinc finger; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR SUPFAM; SSF55277; GYF domain; 1.
DR SUPFAM; SSF159042; Plus3-like; 1.
DR SUPFAM; SSF47592; SWIB/MDM2 domain; 1.
DR PROSITE; PS50829; GYF; 1.
DR PROSITE; PS51360; PLUS3; 1.
DR PROSITE; PS51925; SWIB_MDM2; 1.
DR PROSITE; PS50103; ZF_C3H1; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
DR PROSITE; PS50016; ZF_PHD_2; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|PROSITE-
KW ProRule:PRU00723}; Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000000226};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Zinc {ECO:0000256|ARBA:ARBA00022833, ECO:0000256|PROSITE-ProRule:PRU00723};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00723}.
FT DOMAIN 225..291
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT DOMAIN 441..524
FT /note="DM2"
FT /evidence="ECO:0000259|PROSITE:PS51925"
FT DOMAIN 583..716
FT /note="Plus3"
FT /evidence="ECO:0000259|PROSITE:PS51360"
FT DOMAIN 932..986
FT /note="GYF"
FT /evidence="ECO:0000259|PROSITE:PS50829"
FT DOMAIN 1456..1481
FT /note="C3H1-type"
FT /evidence="ECO:0000259|PROSITE:PS50103"
FT ZN_FING 1456..1481
FT /note="C3H1-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT REGION 92..216
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 372..443
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 541..574
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 759..832
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 846..897
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1012..1104
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1151..1173
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1227..1304
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1408..1463
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 92..178
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 179..202
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 374..409
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 759..777
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 815..832
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 846..862
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 864..878
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 879..897
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1012..1067
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1082..1104
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1152..1171
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1248..1275
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1481 AA; 162581 MW; C437898FDC750C2F CRC64;
MDADDDEAPL QPHSDAQCHT DAYAAVGDPE PDTVGELSAA AAQEVVAVEP DATMETAVES
DAGVGTHAMD EVIEEKGTEV TDVDDMALEM ENVEEEANLT IDAEEDEIGD EDANEDALME
EEEEDEQQQG EEEEEEEEKQ QQGVEEEEEE QQQAEEDEEE EEEDEGEEEQ QQGEEEDADA
DAGMTKTEDT EEKEEKSVSG GKRKRGAGKN AKATGRVASR KKTEEDVCFI CFDGGDLVLC
DRRGCPKAYH PSCVNRDEAF FRAKGKWNCG WHLCSNCERN ANYMCYTCTF SLCKGCIKDA
VILCVRGNKG FCETCMRTVM LIEQNVQGSN VGQIDFDDKN SWEYLFKDYY IDLKEKLSLT
FDEITQAKNP WKGSDMLHSK EESPDELFDA PNDRGSDSDS SYENDSNRSK RRKAKKRGKS
RSKEGNLHGA VTVSGADGPS GNDSAEWASK ELLEFVMHMR NGDKSVLSQF DVQALLLEYI
KRNKLRDPRR KSQIICDARL QNLFGKPRVG HFEMLKLLES HFLLKEDSQA EDMQGSVVDT
EVSHLEGDGN PNSYMKAGKD KRRKNRKKGD ERGLQTNVDD YAAIDNHNIT LIYLRRNLVE
DLLEDTEKFH DKVVGSFVRI RISGSGQKQD LYRLVQVVGT CKAAEPYKVG KRMTDTLLEI
LNLNKTEIVS IDIISNQEFT EDECKRLRQS IKCGLINRLT VGDIQDKALV LQAVRVKDWL
ETEIVRLSHL RDRASEKGRR KELRECVEKL QLLKTPEERQ RRLEEIPEIH VDPNMDPSYE
SEEDEDEMDD KRRENYMRPR GSTSFGRRGR DIVSPRSVSV SNDSWSGTRN YSNANQELSR
NLSSKGFSVK GENASNVNEV LNDTHLHPGR DRESQLSNSW ERQKLSSSLE SGAKSNQSLV
TSDSFSTAVL EASATPSSAG ITPSALKINE TEKTWHYQDP SGKVQGPFSM VQLRKWSNTG
YFPADLRIWR TTEKQDDSIL VTDALAGNFS KEPSMVDKAQ KVHDLHYPAS YSRKSAQGTE
GQVGERPSFD QNSGSLNSHS TLGSPGQTTG GSWRSKDNMN SLANRTSPLA VEVPKNPANG
WGSDAGSRNE ATNLPSPTPQ TTPGVTKVQA FENKWSPTPV QLPGSLIGNS FPGNHGGLQA
SLVVHAEHAV QNPEKGSSQP GISSASIDNS KLHPQPAAVA PVLPSGVDLK MAGTNMQNQV
VRSHNSHAEA QGWGSAGVPK PELQAWGGVS SQPNPAAMPA QPASHGPWVD ASSVQNTASF
NTGNPSPSLP TPGFLGMNTS EPWRPPASSS QPNITAPSPA PPNMPWGMGM PGNQNMNWGG
VVPANMNATW MPTQVPAPGN SNPGWAAPNQ GLPPSQGLPP VNAVGWVGPG QGRSHVNVNA
GWVGSGQGLA PGNANPVWVP PAGNPGMWGS EQSHNGDRFP NQGDRGTHGR DSGYGGKSWN
RQSSFGRGAP SRPPFGGQRG VCKYHESGHC RKGDSCDFLH T
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