ID V7BD96_PHAVU Unreviewed; 1228 AA.
AC V7BD96;
DT 19-FEB-2014, integrated into UniProtKB/TrEMBL.
DT 19-FEB-2014, sequence version 1.
DT 27-MAR-2024, entry version 39.
DE RecName: Full=KOW domain-containing protein {ECO:0000259|SMART:SM00739};
DE Flags: Fragment;
GN ORFNames=PHAVU_007G024600g {ECO:0000313|EMBL:ESW14873.1};
OS Phaseolus vulgaris (Kidney bean) (French bean).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Phaseolus.
OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW14873.1, ECO:0000313|Proteomes:UP000000226};
RN [1] {ECO:0000313|Proteomes:UP000000226}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. G19833 {ECO:0000313|Proteomes:UP000000226};
RX PubMed=24908249; DOI=10.1038/ng.3008;
RA Schmutz J., McClean P.E., Mamidi S., Wu G.A., Cannon S.B., Grimwood J.,
RA Jenkins J., Shu S., Song Q., Chavarro C., Torres-Torres M., Geffroy V.,
RA Moghaddam S.M., Gao D., Abernathy B., Barry K., Blair M., Brick M.A.,
RA Chovatia M., Gepts P., Goodstein D.M., Gonzales M., Hellsten U.,
RA Hyten D.L., Jia G., Kelly J.D., Kudrna D., Lee R., Richard M.M.,
RA Miklas P.N., Osorno J.M., Rodrigues J., Thareau V., Urrea C.A., Wang M.,
RA Yu Y., Zhang M., Wing R.A., Cregan P.B., Rokhsar D.S., Jackson S.A.;
RT "A reference genome for common bean and genome-wide analysis of dual
RT domestications.";
RL Nat. Genet. 46:707-713(2014).
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DR EMBL; CM002294; ESW14873.1; -; Genomic_DNA.
DR RefSeq; XP_007142879.1; XM_007142817.1.
DR AlphaFoldDB; V7BD96; -.
DR STRING; 3885.V7BD96; -.
DR EnsemblPlants; ESW14873; ESW14873; PHAVU_007G024600g.
DR GeneID; 18624655; -.
DR Gramene; ESW14873; ESW14873; PHAVU_007G024600g.
DR KEGG; pvu:PHAVU_007G024600g; -.
DR eggNOG; KOG1999; Eukaryota.
DR OMA; GDANQNN; -.
DR OrthoDB; 24955at2759; -.
DR Proteomes; UP000000226; Chromosome 7.
DR GO; GO:0005654; C:nucleoplasm; IEA:EnsemblPlants.
DR GO; GO:0003682; F:chromatin binding; IEA:EnsemblPlants.
DR GO; GO:0003723; F:RNA binding; IEA:EnsemblPlants.
DR GO; GO:0006306; P:DNA methylation; IEA:EnsemblPlants.
DR GO; GO:0006354; P:DNA-templated transcription elongation; IEA:InterPro.
DR GO; GO:0080188; P:gene silencing by RNA-directed DNA methylation; IEA:EnsemblPlants.
DR GO; GO:0032784; P:regulation of DNA-templated transcription elongation; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IEA:InterPro.
DR GO; GO:0030422; P:siRNA processing; IEA:EnsemblPlants.
DR CDD; cd06081; KOW_Spt5_1; 1.
DR CDD; cd06084; KOW_Spt5_4; 1.
DR CDD; cd09888; NGN_Euk; 1.
DR Gene3D; 2.30.30.30; -; 2.
DR Gene3D; 3.30.70.940; NusG, N-terminal domain; 1.
DR InterPro; IPR005824; KOW.
DR InterPro; IPR041973; KOW_Spt5_1.
DR InterPro; IPR041977; KOW_Spt5_4.
DR InterPro; IPR005100; NGN-domain.
DR InterPro; IPR036735; NGN_dom_sf.
DR InterPro; IPR039385; NGN_Euk.
DR InterPro; IPR014722; Rib_uL2_dom2.
DR InterPro; IPR039659; SPT5.
DR PANTHER; PTHR11125:SF8; PROTEIN RNA-DIRECTED DNA METHYLATION 3; 1.
DR PANTHER; PTHR11125; SUPPRESSOR OF TY 5; 1.
DR Pfam; PF03439; Spt5-NGN; 1.
DR SMART; SM00739; KOW; 3.
PE 4: Predicted;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000000226};
KW Signal {ECO:0000256|SAM:SignalP}.
FT SIGNAL 1..16
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 17..1228
FT /note="KOW domain-containing protein"
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5004756589"
FT DOMAIN 269..296
FT /note="KOW"
FT /evidence="ECO:0000259|SMART:SM00739"
FT DOMAIN 506..533
FT /note="KOW"
FT /evidence="ECO:0000259|SMART:SM00739"
FT DOMAIN 612..639
FT /note="KOW"
FT /evidence="ECO:0000259|SMART:SM00739"
FT REGION 38..65
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 81..123
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 572..610
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 663..1193
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 81..102
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 663..686
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 694..764
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 795..954
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 976..1149
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:ESW14873.1"
SQ SEQUENCE 1228 AA; 132205 MW; EF6A483EB76891BA CRC64;
QHTLLAHFFF LSLSLSLYLS QHAKFALVSA FSVEMTNKGK GKGKEVAGKA SAGKRKGGFQ
DDKTGGRLKT RGIEFFEDAA EVDDSEESDF SDDSDFGDDF SDEDFNASPR RMSEPAKGQS
SFPRIPKEEL VDEEEFDRIF EERYANPSRF IKYADEFDDK GNNPNSIHDA VLELMPNIWK
VKCTVGRERL SALCLMQKFA DLFSLGTVLK IQSAFAVDHM KGCVYIEAER QYDINEACQG
IPGIYVTRVA LVPNSEVYHL FSVRNRTPEI SEGMWARIKG GNYKGDLAQV VAVNNSRKKV
TVKLIPRIDL QALAAKFGGG YSRQKLAVPA PRLISSSELE EFRPLMQFKR DRETGKVFEV
LDGLMLKDGY VYKKVSPDSL SLWGVVPTEE ELLKFGSSEN NESNDLEWLA QLYGDKKKKR
VIRPSKGGGK GESSSGSGVG NDFELYDLVC FGKKDFGVIV GMDKDDIYKI LKESSDGPVA
VSIERNEIKS GLFDLKLTAL DQHSKTILVS DTVRVLDGLS KGKQGIVKHI YRGIVFLHDG
NEEENGGYVT CKSSMCEKVK LDVGDFSGKE SEPGPLFFED QPSSPRSPLS PKKPWQAREN
NREFNRGDNN NMFNIGQTLR IRIGPLKGYL CRVIALRRTD VTVKLDSQQK VLTVKCEHLS
EVQGRSTAIS SSGDPDSSSS KPFDLLGSEG SSGGWLNGAG TSTGGGGWNA AGASSERDAW
SNHSTPSLLK PESSLNPFSS KGAEDSAWET KSNPNQNSTW VAAVEKTGVA SDPEQSGGCW
GNVGGSWGQA EPKTGSVGDD NQNSSWNTTK VSGKESSGWN NVQKSNNETS STGWGQAEPK
TGSVGDDNQN SSWNTTKVSE KESSGWNNVQ KSNNETSSNG WGDGNGFKSG SDEGNLNSSW
SGWKSGTSGV KVGNPSGSSD INTSKDAGWS NKPNKEGSEP SGRRTGSNWN ASISSSHDKD
EEGKDQGGWN AGNTLDGPVS GGTGGNQGNG WGQKNNWNSE SNENKSTSGN SHWSSGHTEP
GNQDSKLDMK HNWNSGSSGN LASDSKNSNW NSGSDNFNEN PNRGNNDNWN TNKSFPSAGN
ESKNSDWSSG HPDPGNNNPS WGKKGNWNSG SGDANQNNSW KSNSSWSAGS SDNQFNGENE
GSNENSGGVG GGNWRGGYQG RGGSDRGGFR GRGFRGRGDR GGGGFGGRGD RGVGALEAGE
TVGVGALEAG ETVGVGALVA GETGGLWW
//
