ID V7BKR9_PHAVU Unreviewed; 484 AA.
AC V7BKR9;
DT 19-FEB-2014, integrated into UniProtKB/TrEMBL.
DT 19-FEB-2014, sequence version 1.
DT 27-MAR-2024, entry version 48.
DE RecName: Full=C3H1-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=PHAVU_006G053500g {ECO:0000313|EMBL:ESW18589.1};
OS Phaseolus vulgaris (Kidney bean) (French bean).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Phaseolus.
OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW18589.1, ECO:0000313|Proteomes:UP000000226};
RN [1] {ECO:0000313|EMBL:ESW18589.1}
RP NUCLEOTIDE SEQUENCE.
RA Schmutz J., McClean P., Shu S., Cregan P., Rokhsar D., Jackson S.;
RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Proteomes:UP000000226}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. G19833 {ECO:0000313|Proteomes:UP000000226};
RX PubMed=24908249; DOI=10.1038/ng.3008;
RA Schmutz J., McClean P.E., Mamidi S., Wu G.A., Cannon S.B., Grimwood J.,
RA Jenkins J., Shu S., Song Q., Chavarro C., Torres-Torres M., Geffroy V.,
RA Moghaddam S.M., Gao D., Abernathy B., Barry K., Blair M., Brick M.A.,
RA Chovatia M., Gepts P., Goodstein D.M., Gonzales M., Hellsten U.,
RA Hyten D.L., Jia G., Kelly J.D., Kudrna D., Lee R., Richard M.M.,
RA Miklas P.N., Osorno J.M., Rodrigues J., Thareau V., Urrea C.A., Wang M.,
RA Yu Y., Zhang M., Wing R.A., Cregan P.B., Rokhsar D.S., Jackson S.A.;
RT "A reference genome for common bean and genome-wide analysis of dual
RT domestications.";
RL Nat. Genet. 46:707-713(2014).
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DR EMBL; CM002293; ESW18588.1; -; Genomic_DNA.
DR EMBL; CM002293; ESW18589.1; -; Genomic_DNA.
DR RefSeq; XP_007146594.1; XM_007146532.1.
DR RefSeq; XP_007146595.1; XM_007146533.1.
DR AlphaFoldDB; V7BKR9; -.
DR STRING; 3885.V7BKR9; -.
DR EnsemblPlants; ESW18588; ESW18588; PHAVU_006G053500g.
DR EnsemblPlants; ESW18589; ESW18589; PHAVU_006G053500g.
DR GeneID; 18627861; -.
DR Gramene; ESW18588; ESW18588; PHAVU_006G053500g.
DR Gramene; ESW18589; ESW18589; PHAVU_006G053500g.
DR KEGG; pvu:PHAVU_006G053500g; -.
DR eggNOG; ENOG502QS3A; Eukaryota.
DR OMA; HMYGNDS; -.
DR OrthoDB; 1214692at2759; -.
DR Proteomes; UP000000226; Chromosome 6.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR Gene3D; 3.30.70.330; -; 1.
DR Gene3D; 4.10.1000.10; Zinc finger, CCCH-type; 1.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR025605; OST-HTH/LOTUS_dom.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR PANTHER; PTHR24009; RNA-BINDING (RRM/RBD/RNP MOTIFS); 1.
DR PANTHER; PTHR24009:SF40; ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18-LIKE; 1.
DR Pfam; PF00076; RRM_1; 1.
DR Pfam; PF00642; zf-CCCH; 1.
DR SMART; SM00360; RRM; 1.
DR SUPFAM; SSF90229; CCCH zinc finger; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR PROSITE; PS51644; HTH_OST; 1.
DR PROSITE; PS50102; RRM; 1.
DR PROSITE; PS50103; ZF_C3H1; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|PROSITE-
KW ProRule:PRU00723}; Reference proteome {ECO:0000313|Proteomes:UP000000226};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176};
KW Zinc {ECO:0000256|ARBA:ARBA00022833, ECO:0000256|PROSITE-ProRule:PRU00723};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00723}.
FT DOMAIN 114..141
FT /note="C3H1-type"
FT /evidence="ECO:0000259|PROSITE:PS50103"
FT DOMAIN 165..248
FT /note="HTH OST-type"
FT /evidence="ECO:0000259|PROSITE:PS51644"
FT DOMAIN 267..343
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT ZN_FING 114..141
FT /note="C3H1-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT REGION 450..470
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 450..469
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 484 AA; 54119 MW; 67ECD72A83D86FBB CRC64;
MNCQPGFDNF SVISPTSVIT PGTPTTTAGI QVQSPFWDPQ PANNTNAEYM TLGYLDSISE
LQKQTPFFSL ENHMDAINSR AVGTSGTPGI ANDYYGLDAS SAGNLGGKVG RRFDHPVKIC
HYFNKGFCKH GNSCRYYHGL GAPDVFSHMY GNDSLNDDQM ISPGSLAQLE SEIVELLKLK
KGGSISIASL PMAYFDKYKK VLQADGYLTE SQRHGKSGYS LTKLLARLKN SIRLIDRPHG
QHSVVLAEDA PKFNGRADYA KYISASRQIY LTFPADSTFS EIDVSNYFGT FGNVEDVRIP
SQERRMFGFV TFDDPDTVKA ILDKGNPHYV CESRVLVKPY KEKPKLMLRK HPDRIEHPHP
AYCSAHYVDV DTEPSSSEHV PRGCTNPRFL RRLIIEQQEE TALEFQRRRF AELQLAQNSF
TTSPHFGFTT DRSKVSDDHF NVHSTQSHNH VLNDNYTDED SNQGLNLPDS PFSFPVDSGI
SAVM
//
