ID V7BL48_PHAVU Unreviewed; 404 AA.
AC V7BL48;
DT 19-FEB-2014, integrated into UniProtKB/TrEMBL.
DT 19-FEB-2014, sequence version 1.
DT 27-MAR-2024, entry version 58.
DE RecName: Full=DNA damage-inducible protein 1 {ECO:0008006|Google:ProtNLM};
GN ORFNames=PHAVU_006G060300g {ECO:0000313|EMBL:ESW18672.1};
OS Phaseolus vulgaris (Kidney bean) (French bean).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Phaseolus.
OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW18672.1, ECO:0000313|Proteomes:UP000000226};
RN [1] {ECO:0000313|Proteomes:UP000000226}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. G19833 {ECO:0000313|Proteomes:UP000000226};
RX PubMed=24908249; DOI=10.1038/ng.3008;
RA Schmutz J., McClean P.E., Mamidi S., Wu G.A., Cannon S.B., Grimwood J.,
RA Jenkins J., Shu S., Song Q., Chavarro C., Torres-Torres M., Geffroy V.,
RA Moghaddam S.M., Gao D., Abernathy B., Barry K., Blair M., Brick M.A.,
RA Chovatia M., Gepts P., Goodstein D.M., Gonzales M., Hellsten U.,
RA Hyten D.L., Jia G., Kelly J.D., Kudrna D., Lee R., Richard M.M.,
RA Miklas P.N., Osorno J.M., Rodrigues J., Thareau V., Urrea C.A., Wang M.,
RA Yu Y., Zhang M., Wing R.A., Cregan P.B., Rokhsar D.S., Jackson S.A.;
RT "A reference genome for common bean and genome-wide analysis of dual
RT domestications.";
RL Nat. Genet. 46:707-713(2014).
CC -!- SIMILARITY: Belongs to the DDI1 family.
CC {ECO:0000256|ARBA:ARBA00009136}.
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DR EMBL; CM002293; ESW18672.1; -; Genomic_DNA.
DR RefSeq; XP_007146678.1; XM_007146616.1.
DR AlphaFoldDB; V7BL48; -.
DR SMR; V7BL48; -.
DR STRING; 3885.V7BL48; -.
DR EnsemblPlants; ESW18672; ESW18672; PHAVU_006G060300g.
DR GeneID; 18627933; -.
DR Gramene; ESW18672; ESW18672; PHAVU_006G060300g.
DR KEGG; pvu:PHAVU_006G060300g; -.
DR eggNOG; KOG0012; Eukaryota.
DR OMA; QIGNDHL; -.
DR OrthoDB; 1332686at2759; -.
DR Proteomes; UP000000226; Chromosome 6.
DR GO; GO:0004190; F:aspartic-type endopeptidase activity; IEA:UniProtKB-KW.
DR GO; GO:0031593; F:polyubiquitin modification-dependent protein binding; IEA:UniProt.
DR GO; GO:0006508; P:proteolysis; IEA:UniProtKB-KW.
DR CDD; cd05479; RP_DDI; 1.
DR CDD; cd14309; UBA_scDdi1_like; 1.
DR CDD; cd01796; Ubl_Ddi1_like; 1.
DR Gene3D; 2.40.70.10; Acid Proteases; 1.
DR Gene3D; 1.10.8.10; DNA helicase RuvA subunit, C-terminal domain; 1.
DR InterPro; IPR033882; DDI1_N.
DR InterPro; IPR019103; Peptidase_aspartic_DDI1-type.
DR InterPro; IPR021109; Peptidase_aspartic_dom_sf.
DR InterPro; IPR015940; UBA.
DR InterPro; IPR009060; UBA-like_sf.
DR InterPro; IPR000626; Ubiquitin-like_dom.
DR InterPro; IPR029071; Ubiquitin-like_domsf.
DR PANTHER; PTHR12917; ASPARTYL PROTEASE DDI-RELATED; 1.
DR PANTHER; PTHR12917:SF1; AT13091P; 1.
DR Pfam; PF09668; Asp_protease; 1.
DR Pfam; PF00627; UBA; 1.
DR Pfam; PF00240; ubiquitin; 1.
DR SMART; SM00165; UBA; 1.
DR SMART; SM00213; UBQ; 1.
DR SUPFAM; SSF50630; Acid proteases; 1.
DR SUPFAM; SSF46934; UBA-like; 1.
DR SUPFAM; SSF54236; Ubiquitin-like; 1.
DR PROSITE; PS50030; UBA; 1.
DR PROSITE; PS50053; UBIQUITIN_2; 1.
PE 3: Inferred from homology;
KW Aspartyl protease {ECO:0000256|ARBA:ARBA00022750};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Protease {ECO:0000256|ARBA:ARBA00022670};
KW Reference proteome {ECO:0000313|Proteomes:UP000000226}.
FT DOMAIN 1..70
FT /note="Ubiquitin-like"
FT /evidence="ECO:0000259|PROSITE:PS50053"
FT DOMAIN 361..404
FT /note="UBA"
FT /evidence="ECO:0000259|PROSITE:PS50030"
FT REGION 331..364
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 336..354
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 404 AA; 43936 MW; DFC7311B1AB55E08 CRC64;
MKITVMTADE QILTLDVDPQ ESVENVKALL EVETSVALQQ QQLLFNGKEV RNSEKLSALG
VKDDDLLMMV SGAGAASAAS SGSTNDLSLN TDGSAVNPSA FQQHIRRDSN LMGQLFQSDP
ELAQAILGND LNRLQEVLRL RHHQRDELKR QKEEELALLY ADPFDVEAQK KIEAAIRQKG
IDENWAAALE HNPEAFARVV MLYVDMEVNG VPLKAFVDSG AQSTIISKSC AERCGLLRLL
DQRYRGIAHG VGQSEILGRI HVAPIKIGSI FYPCSFLVLD SPNMEFLFGL DMLRKHQCII
DLKESVMRVG GGEVSVPFLQ EKDLPSRFLD EERASGSGGQ ITSGSNNPPT GGHPSGGASS
DKDSEFEAKV AKLVELGFGR NAVVEALQLF NGNEEQAAGF LFGG
//
