ID V7C0V4_PHAVU Unreviewed; 370 AA.
AC V7C0V4;
DT 19-FEB-2014, integrated into UniProtKB/TrEMBL.
DT 19-FEB-2014, sequence version 1.
DT 27-MAR-2024, entry version 41.
DE RecName: Full=Polyribonucleotide 5'-hydroxyl-kinase Clp1 P-loop domain-containing protein {ECO:0000259|Pfam:PF16575};
GN ORFNames=PHAVU_004G010600g {ECO:0000313|EMBL:ESW22998.1};
OS Phaseolus vulgaris (Kidney bean) (French bean).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Phaseolus.
OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW22998.1, ECO:0000313|Proteomes:UP000000226};
RN [1] {ECO:0000313|Proteomes:UP000000226}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. G19833 {ECO:0000313|Proteomes:UP000000226};
RX PubMed=24908249; DOI=10.1038/ng.3008;
RA Schmutz J., McClean P.E., Mamidi S., Wu G.A., Cannon S.B., Grimwood J.,
RA Jenkins J., Shu S., Song Q., Chavarro C., Torres-Torres M., Geffroy V.,
RA Moghaddam S.M., Gao D., Abernathy B., Barry K., Blair M., Brick M.A.,
RA Chovatia M., Gepts P., Goodstein D.M., Gonzales M., Hellsten U.,
RA Hyten D.L., Jia G., Kelly J.D., Kudrna D., Lee R., Richard M.M.,
RA Miklas P.N., Osorno J.M., Rodrigues J., Thareau V., Urrea C.A., Wang M.,
RA Yu Y., Zhang M., Wing R.A., Cregan P.B., Rokhsar D.S., Jackson S.A.;
RT "A reference genome for common bean and genome-wide analysis of dual
RT domestications.";
RL Nat. Genet. 46:707-713(2014).
CC -!- SIMILARITY: Belongs to the Clp1 family. NOL9/GRC3 subfamily.
CC {ECO:0000256|ARBA:ARBA00011003}.
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DR EMBL; CM002291; ESW22998.1; -; Genomic_DNA.
DR RefSeq; XP_007151004.1; XM_007150942.1.
DR AlphaFoldDB; V7C0V4; -.
DR STRING; 3885.V7C0V4; -.
DR EnsemblPlants; ESW22998; ESW22998; PHAVU_004G010600g.
DR GeneID; 18631650; -.
DR Gramene; ESW22998; ESW22998; PHAVU_004G010600g.
DR KEGG; pvu:PHAVU_004G010600g; -.
DR eggNOG; KOG2750; Eukaryota.
DR OMA; CGPKNAG; -.
DR OrthoDB; 5480745at2759; -.
DR Proteomes; UP000000226; Chromosome 4.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0051731; F:polynucleotide 5'-hydroxyl-kinase activity; IEA:InterPro.
DR GO; GO:0016310; P:phosphorylation; IEA:UniProtKB-KW.
DR GO; GO:0006396; P:RNA processing; IEA:InterPro.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR045116; Clp1/Grc3.
DR InterPro; IPR032319; CLP1_P.
DR InterPro; IPR027417; P-loop_NTPase.
DR PANTHER; PTHR12755; CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P; 1.
DR PANTHER; PTHR12755:SF3; POLYNUCLEOTIDE 5'-HYDROXYL-KINASE NOL9; 1.
DR Pfam; PF16575; CLP1_P; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Kinase {ECO:0000256|ARBA:ARBA00022777};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000000226};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 35..237
FT /note="Polyribonucleotide 5'-hydroxyl-kinase Clp1 P-loop"
FT /evidence="ECO:0000259|Pfam:PF16575"
SQ SEQUENCE 370 AA; 41127 MW; E76AC5DDFC8E4158 CRC64;
MDSSPSRDIC IPEQWSEAAE SIAYSSTPPI VFICGAKNCG KTTFSRYLLN ILLHKYAKVA
YLDTDVGQPE FTPPAFLSLT VVHKVTPDLT VPCLKTPERC LFFGDVSSKR DPSTYLSYVF
AIYDYYQKEY CISEKGENPC NVKLPLIVNT SGWVKGVGYD VLVDMLKYIS PTHVVKINIS
SENKNLPAGE FWLDEEYDGT INLIEINSAR QDSSNRSVLF QKDARPLRDL RIMAYFRQCF
SSDSNISTIK ELAHALASHC PYEVPIASVK IRHLHCEVPS SEMFFSLNAT IVGLAVDSEG
PENLPWCFGL GIVRGIDAVQ GVLFVITPVP HSSLEKVNLL LQGYIQIPSC LLQVQGCISP
YMSANTLAIN
//
