ID V7CMY3_PHAVU Unreviewed; 696 AA.
AC V7CMY3;
DT 19-FEB-2014, integrated into UniProtKB/TrEMBL.
DT 19-FEB-2014, sequence version 1.
DT 27-MAR-2024, entry version 51.
DE RecName: Full=RNA helicase {ECO:0000256|ARBA:ARBA00012552};
DE EC=3.6.4.13 {ECO:0000256|ARBA:ARBA00012552};
GN ORFNames=PHAVU_002G175400g {ECO:0000313|EMBL:ESW30698.1};
OS Phaseolus vulgaris (Kidney bean) (French bean).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Phaseolus.
OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW30698.1, ECO:0000313|Proteomes:UP000000226};
RN [1] {ECO:0000313|Proteomes:UP000000226}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. G19833 {ECO:0000313|Proteomes:UP000000226};
RX PubMed=24908249; DOI=10.1038/ng.3008;
RA Schmutz J., McClean P.E., Mamidi S., Wu G.A., Cannon S.B., Grimwood J.,
RA Jenkins J., Shu S., Song Q., Chavarro C., Torres-Torres M., Geffroy V.,
RA Moghaddam S.M., Gao D., Abernathy B., Barry K., Blair M., Brick M.A.,
RA Chovatia M., Gepts P., Goodstein D.M., Gonzales M., Hellsten U.,
RA Hyten D.L., Jia G., Kelly J.D., Kudrna D., Lee R., Richard M.M.,
RA Miklas P.N., Osorno J.M., Rodrigues J., Thareau V., Urrea C.A., Wang M.,
RA Yu Y., Zhang M., Wing R.A., Cregan P.B., Rokhsar D.S., Jackson S.A.;
RT "A reference genome for common bean and genome-wide analysis of dual
RT domestications.";
RL Nat. Genet. 46:707-713(2014).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC Evidence={ECO:0000256|ARBA:ARBA00001556};
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DR EMBL; CM002289; ESW30698.1; -; Genomic_DNA.
DR RefSeq; XP_007158704.1; XM_007158642.1.
DR AlphaFoldDB; V7CMY3; -.
DR STRING; 3885.V7CMY3; -.
DR EnsemblPlants; ESW30698; ESW30698; PHAVU_002G175400g.
DR GeneID; 18638277; -.
DR Gramene; ESW30698; ESW30698; PHAVU_002G175400g.
DR KEGG; pvu:PHAVU_002G175400g; -.
DR eggNOG; KOG0922; Eukaryota.
DR OMA; EANECGC; -.
DR OrthoDB; 5488182at2759; -.
DR Proteomes; UP000000226; Chromosome 2.
DR GO; GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR CDD; cd17917; DEXHc_RHA-like; 1.
DR CDD; cd18791; SF2_C_RHA; 1.
DR Gene3D; 1.20.120.1080; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR011709; DEAD-box_helicase_OB_fold.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR002464; DNA/RNA_helicase_DEAH_CS.
DR InterPro; IPR048333; HA2_WH.
DR InterPro; IPR007502; Helicase-assoc_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR PANTHER; PTHR18934; ATP-DEPENDENT RNA HELICASE; 1.
DR PANTHER; PTHR18934:SF234; ATP-DEPENDENT RNA HELICASE DHX40-RELATED; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF21010; HA2_C; 1.
DR Pfam; PF04408; HA2_N; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF07717; OB_NTP_bind; 1.
DR SMART; SM00382; AAA; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00847; HA2; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00690; DEAH_ATP_HELICASE; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000000226};
KW Spliceosome {ECO:0000256|ARBA:ARBA00022728}.
FT DOMAIN 14..175
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 201..374
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 656..680
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 696 AA; 78145 MW; 507CA9BC005E749F CRC64;
MVSLPIVQHE EKIIQTVERN PVVVVIGETG SGKSTQLSQM LHRRGYGKIA VTQPRRVAAV
SVARRVAQEL GVQLGEEVGY AIRFEDRISH DTRIKYLTDG VLLRESLANP ELREYSVIIL
DEAHERSLNT DILMGLMKRL VKVRSSDLKV LITSATLDGD KVSKFFADCP VLNIPGKLYP
VEVLYSSERP SSYLESSLKT ALDIHIHQPE GDILIFMTGQ DDIEKLVSKL EDKVRALEEG
SCMDAIILPL HGSLPPELQV RVFSPPPPNC RRIIVATNIA ETSLTVDGVV YVIDSGYVKQ
RQYNPSSGMY SLDVVQISKV QANQRAGRAG RTCPGKCYRL YPSRIYNDEF LDVTVPEIQR
SSLAGCVLYL KSLDLPDIDI LKFDFLDPPS FESLQDALKQ LYLIDAIDEN GAITSFGQKM
AELPLEPSLS RTLMEANHYG CLSEALTVAA MLSAETTLLP VQRKTEKKRK HSISDLVDGS
GLGDHIQLLH IYQCWDQTDF DIGWCKDNGL QVRGMLFVKD VRKQLSQIMQ KISKGPPDVK
ANGKREEFKQ GYRNLRKALC VGYANQLAER KMHHNGYRTL GFQGQVVQVH PSSVLSLDDL
GKFPDYVVYH ELIATPRPYM RNVCAVEMRW VIPIINKLNT LDVYKLSGGI HHVEEEPEKN
LPDLPKKDVE VASTADDRES RIQAARERFL ARKGKK
//
