ID V7CQF4_PHAVU Unreviewed; 683 AA.
AC V7CQF4;
DT 19-FEB-2014, integrated into UniProtKB/TrEMBL.
DT 19-FEB-2014, sequence version 1.
DT 27-MAR-2024, entry version 40.
DE RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN ORFNames=PHAVU_002G3226001g {ECO:0000313|EMBL:ESW32437.1};
OS Phaseolus vulgaris (Kidney bean) (French bean).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Phaseolus.
OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW32437.1, ECO:0000313|Proteomes:UP000000226};
RN [1] {ECO:0000313|Proteomes:UP000000226}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. G19833 {ECO:0000313|Proteomes:UP000000226};
RX PubMed=24908249; DOI=10.1038/ng.3008;
RA Schmutz J., McClean P.E., Mamidi S., Wu G.A., Cannon S.B., Grimwood J.,
RA Jenkins J., Shu S., Song Q., Chavarro C., Torres-Torres M., Geffroy V.,
RA Moghaddam S.M., Gao D., Abernathy B., Barry K., Blair M., Brick M.A.,
RA Chovatia M., Gepts P., Goodstein D.M., Gonzales M., Hellsten U.,
RA Hyten D.L., Jia G., Kelly J.D., Kudrna D., Lee R., Richard M.M.,
RA Miklas P.N., Osorno J.M., Rodrigues J., Thareau V., Urrea C.A., Wang M.,
RA Yu Y., Zhang M., Wing R.A., Cregan P.B., Rokhsar D.S., Jackson S.A.;
RT "A reference genome for common bean and genome-wide analysis of dual
RT domestications.";
RL Nat. Genet. 46:707-713(2014).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
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DR EMBL; CM002289; ESW32437.1; -; Genomic_DNA.
DR RefSeq; XP_007160443.1; XM_007160381.1.
DR AlphaFoldDB; V7CQF4; -.
DR EnsemblPlants; ESW32437; ESW32437; PHAVU_002G3226001g.
DR GeneID; 18639791; -.
DR Gramene; ESW32437; ESW32437; PHAVU_002G3226001g.
DR KEGG; pvu:PHAVU_002G3226001; -.
DR eggNOG; KOG4197; Eukaryota.
DR OMA; KCGNIKM; -.
DR OrthoDB; 1011816at2759; -.
DR Proteomes; UP000000226; Chromosome 2.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 4.
DR PANTHER; PTHR24015:SF1854; OS07G0578800 PROTEIN; 1.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF13041; PPR_2; 1.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS51375; PPR; 3.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000000226};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 172..206
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 273..307
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 376..410
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 591..683
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 683 AA; 76790 MW; 5EA2638E35A08939 CRC64;
MSSTQSVTRR ILRNPNTVVS TCQAKQLHAQ IVKARATPHS HSLAWLCIIK CYVAHGLLRH
SLAAFNLMRA SGVCPHRHAF PSLLKASTLL KHFPLAQSLH ASAIRLGFHF DLYTANALMN
VYSKFHSHNV FDQFSQTLQY HNNYNNTNSD NNNFAVKIDC VRKVFDRMPV RDVVSWNTVI
AGNAQNGMYE EALDMVREMG RQNLRPDSFT LSSVLPIFAE HVDVIKGKEI HGYAVRHGFD
KDVFIGSSLI DMYAKCTHVE LSVRAFYLLS NRDAISWNSI IAGCVQNGRF DQGLGFFRLM
LTEKVKPMQV SFSSVVPACA HLTALNLGKQ LHGYIIRLGF NGNKFIASSL VDMYAKCGNI
KMARYIFDRI EMRERDMVSW TAIIMGCAMH GHALDAVSLF EMMLVDGVKP CYVSFIGVLT
ACNHSGLVDE GWKYFNSMKS EFGIAPGLEH YAAVADLLGR AGRLEEAYDF ISNMAVEPTG
SVWSALLAAC RAHKNIELAE KVVDKVLLVD PENMGAYVMM SNIYSAAQRW RDAAKLRVNM
RKKGLKKTPG CSWIEVGNKV HTFLAGDESH PYYDKINEAL SILLEQMEKE GYVLDTKEVL
HDVDEEHKRN LLRTHSERLA IAFGIISTTA GTTIRVIKNI RVCVDCHTAI KFMAKIVGRE
IIVRDNSRFH HFRNGSCSCG DYW
//
