ID V7CVP1_PHAVU Unreviewed; 397 AA.
AC V7CVP1;
DT 19-FEB-2014, integrated into UniProtKB/TrEMBL.
DT 19-FEB-2014, sequence version 1.
DT 27-MAR-2024, entry version 43.
DE RecName: Full=Histone deacetylase domain-containing protein {ECO:0000259|Pfam:PF00850};
GN ORFNames=PHAVU_001G034500g {ECO:0000313|EMBL:ESW32991.1};
OS Phaseolus vulgaris (Kidney bean) (French bean).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Phaseolus.
OX NCBI_TaxID=3885 {ECO:0000313|EMBL:ESW32991.1, ECO:0000313|Proteomes:UP000000226};
RN [1] {ECO:0000313|Proteomes:UP000000226}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. G19833 {ECO:0000313|Proteomes:UP000000226};
RX PubMed=24908249; DOI=10.1038/ng.3008;
RA Schmutz J., McClean P.E., Mamidi S., Wu G.A., Cannon S.B., Grimwood J.,
RA Jenkins J., Shu S., Song Q., Chavarro C., Torres-Torres M., Geffroy V.,
RA Moghaddam S.M., Gao D., Abernathy B., Barry K., Blair M., Brick M.A.,
RA Chovatia M., Gepts P., Goodstein D.M., Gonzales M., Hellsten U.,
RA Hyten D.L., Jia G., Kelly J.D., Kudrna D., Lee R., Richard M.M.,
RA Miklas P.N., Osorno J.M., Rodrigues J., Thareau V., Urrea C.A., Wang M.,
RA Yu Y., Zhang M., Wing R.A., Cregan P.B., Rokhsar D.S., Jackson S.A.;
RT "A reference genome for common bean and genome-wide analysis of dual
RT domestications.";
RL Nat. Genet. 46:707-713(2014).
CC -!- COFACTOR:
CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
CC Evidence={ECO:0000256|ARBA:ARBA00001947};
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DR EMBL; CM002288; ESW32991.1; -; Genomic_DNA.
DR RefSeq; XP_007160997.1; XM_007160935.1.
DR AlphaFoldDB; V7CVP1; -.
DR EnsemblPlants; ESW32991; ESW32991; PHAVU_001G034500g.
DR GeneID; 18640258; -.
DR Gramene; ESW32991; ESW32991; PHAVU_001G034500g.
DR KEGG; pvu:PHAVU_001G034500g; -.
DR OrthoDB; 239005at2759; -.
DR Proteomes; UP000000226; Chromosome 1.
DR GO; GO:0004407; F:histone deacetylase activity; IEA:UniProtKB-EC.
DR CDD; cd09993; HDAC_classIV; 1.
DR Gene3D; 3.40.800.20; Histone deacetylase domain; 1.
DR InterPro; IPR044150; HDAC_classIV.
DR InterPro; IPR000286; His_deacetylse.
DR InterPro; IPR023801; His_deacetylse_dom.
DR InterPro; IPR037138; His_deacetylse_dom_sf.
DR InterPro; IPR023696; Ureohydrolase_dom_sf.
DR PANTHER; PTHR10625:SF33; HISTONE DEACETYLASE 11; 1.
DR PANTHER; PTHR10625; HISTONE DEACETYLASE HDAC1-RELATED; 1.
DR Pfam; PF00850; Hist_deacetyl; 1.
DR PRINTS; PR01270; HDASUPER.
DR SUPFAM; SSF52768; Arginase/deacetylase; 1.
PE 4: Predicted;
KW Chromatin regulator {ECO:0000256|ARBA:ARBA00022853};
KW Reference proteome {ECO:0000313|Proteomes:UP000000226};
KW Repressor {ECO:0000256|ARBA:ARBA00022491};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 99..380
FT /note="Histone deacetylase"
FT /evidence="ECO:0000259|Pfam:PF00850"
SQ SEQUENCE 397 AA; 44427 MW; B725E689D53A9C89 CRC64;
MQWVRKVYFW IIRVISHSIF GACMKLVNRV SEFSKNISDS SPPPLLSLSM SSSSVNDTEA
LRRNRILSSK LYFDVSPSKV PLIYSESYDI AFLGIEKLHP FDSSKWGRIC RFLVSFGILD
KKCIVEPLEA SKDDLLVVHT ELYLNRLKES SKVAMIVEVP PVALIPNCLV QQKLLSPFRK
QVGGTVLAAK LAKERGWAIN VGGGFHHCSA EKGGGFCAYA DISLCIHFAF VRLNISRVMI
IDLDAHQGNG HEMDFAYDSR VYILDMYNPG IYPLDYEARN YINQKVEVKS GTVTEEYLQK
LDEALEVAGR RFNPELVIYN AGTDILEGDP LGRLEISPEG IALRDEKVFR FARERNIPIV
MLTSGGYMKS SARVIADSIV NLSKKCLIET SGAPKSS
//
