ID W0VC28_9BURK Unreviewed; 860 AA.
AC W0VC28;
DT 19-MAR-2014, integrated into UniProtKB/TrEMBL.
DT 19-MAR-2014, sequence version 1.
DT 27-MAR-2024, entry version 50.
DE SubName: Full=RNA polymerase sigma factor, sigma-70 family protein {ECO:0000313|EMBL:CDG84862.1};
GN ORFNames=GJA_4252 {ECO:0000313|EMBL:CDG84862.1};
OS Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628.
OC Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
OC Oxalobacteraceae; Janthinobacterium.
OX NCBI_TaxID=1349767 {ECO:0000313|EMBL:CDG84862.1, ECO:0000313|Proteomes:UP000027604};
RN [1] {ECO:0000313|EMBL:CDG84862.1, ECO:0000313|Proteomes:UP000027604}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=NBRC 102515 / DSM 9628 {ECO:0000313|Proteomes:UP000027604};
RX PubMed=25883287; DOI=10.1128/genomeA.00277-15;
RA Graupner K., Lackner G., Hertweck C.;
RT "Genome Sequence of Mushroom Soft-Rot Pathogen Janthinobacterium
RT agaricidamnosum.";
RL Genome Announc. 3:e00277-e00277(2015).
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DR EMBL; HG322949; CDG84862.1; -; Genomic_DNA.
DR RefSeq; WP_051781161.1; NZ_HG322949.1.
DR AlphaFoldDB; W0VC28; -.
DR STRING; 1349767.GJA_4252; -.
DR KEGG; jag:GJA_4252; -.
DR PATRIC; fig|1349767.4.peg.823; -.
DR eggNOG; COG0568; Bacteria.
DR HOGENOM; CLU_012909_0_0_4; -.
DR OrthoDB; 8870136at2; -.
DR Proteomes; UP000027604; Chromosome I.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR CDD; cd06171; Sigma70_r4; 1.
DR Gene3D; 1.20.120.1810; -; 1.
DR Gene3D; 1.25.40.20; Ankyrin repeat-containing domain; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 2.
DR InterPro; IPR002110; Ankyrin_rpt.
DR InterPro; IPR036770; Ankyrin_rpt-contain_sf.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR000943; RNA_pol_sigma70.
DR InterPro; IPR009042; RNA_pol_sigma70_r1_2.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR007624; RNA_pol_sigma70_r3.
DR InterPro; IPR007630; RNA_pol_sigma70_r4.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR30603; RNA POLYMERASE SIGMA FACTOR RPO; 1.
DR PANTHER; PTHR30603:SF47; RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC; 1.
DR Pfam; PF12796; Ank_2; 1.
DR Pfam; PF00140; Sigma70_r1_2; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF04539; Sigma70_r3; 1.
DR Pfam; PF04545; Sigma70_r4; 1.
DR PRINTS; PR00046; SIGMA70FCT.
DR SUPFAM; SSF48403; Ankyrin repeat; 1.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 2.
DR PROSITE; PS50088; ANK_REPEAT; 1.
DR PROSITE; PS00716; SIGMA70_2; 1.
PE 4: Predicted;
KW ANK repeat {ECO:0000256|PROSITE-ProRule:PRU00023};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000027604};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT REPEAT 44..76
FT /note="ANK"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00023"
FT DOMAIN 710..736
FT /note="RNA polymerase sigma-70"
FT /evidence="ECO:0000259|PROSITE:PS00716"
FT REGION 404..441
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 757..798
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 418..436
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 860 AA; 95199 MW; 54133D763EA3941C CRC64;
MISTSVPSIL PLNRFLKMAV MAGIESAIQI HIDRGDDLNA RDGNGLTLLM LSAGRNKFSM
CKFLLDAGVD KDLLDPSGKT AYAIAVAAGA HEAVAILEAA VTLQLGVFGA QGLSMIDPPD
EHIMPLESQA LECTTSLAAV DVTQTDTVPH NFHFDAKELS ELESVSEFDL IGWEPEEDAS
PPEVDPSVAQ AASAIQVSIS KYEPIDSSED WEDIDVYLPE RSLPLARTSD AEARELLRLL
LLRAAREGSV PSAAVKALSL NDDQSANPEA EALLTMVIND VGAEVDERFE YAKPDENFEV
YVNPEETPDE EEIVTNAFAF IDNLASRYSE PLRIYQKEFQ RERLISAEEE VFLGKAMEVQ
MERALDALAA WPRGIDLTLA AGNIIKTKQR PLIWLSLGPI EAEPNLESTS EGESDADIAA
TDQAEEELEA DEESQFDSDL PLGSFTSEFS DAMDRLASLP VGPTQRGANW AAIRETLSSL
RLNRRFLLEL ANAETDGAQE SAMQYASAIK GYQIARERMV AANLKLVFHL AKKHLYSGEP
LDDLAQEGNI GLLKAVERYD WRRGFKFSTY ATWWIRQHIG RYIADKCRTI RVPVHVYGSV
QRLARETREF ESENGHSPEL NEIAARLDMP AYKVSALQRL APEPISIHDL SIDELIAADA
LSDFVSPDPF DIAFKSDVHK TIDRVLATLK PKEAQIIRLR YGIGINDSLT LDDIGQRYEV
TRERIRQIEA KAIQKLMQPS RIDALSNVFF GYPFSKESKG QENSSLSSRS KPSADVNSIQ
SQLAARPTPD GTSSPVKTSS IDKFLTQAMA LGVSVIDERK EASGKIWISF IETPDGRYKK
LARKLLALGF EFIPEKGYWK
//
