ID W2YD79_PHYPR Unreviewed; 586 AA.
AC W2YD79;
DT 19-MAR-2014, integrated into UniProtKB/TrEMBL.
DT 19-MAR-2014, sequence version 1.
DT 13-SEP-2023, entry version 31.
DE RecName: Full=Rhamnogalacturonan endolyase {ECO:0008006|Google:ProtNLM};
GN ORFNames=F442_18731 {ECO:0000313|EMBL:ETP32603.1};
OS Phytophthora parasitica P10297.
OC Eukaryota; Sar; Stramenopiles; Oomycota; Peronosporales; Peronosporaceae;
OC Phytophthora.
OX NCBI_TaxID=1317064 {ECO:0000313|EMBL:ETP32603.1, ECO:0000313|Proteomes:UP000018948};
RN [1] {ECO:0000313|EMBL:ETP32603.1, ECO:0000313|Proteomes:UP000018948}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=P10297 {ECO:0000313|EMBL:ETP32603.1,
RC ECO:0000313|Proteomes:UP000018948};
RG The Broad Institute Genomics Platform;
RA Russ C., Tyler B., Panabieres F., Shan W., Tripathy S., Grunwald N.,
RA Machado M., Johnson C.S., Walker B., Young S.K., Zeng Q., Gargeya S.,
RA Fitzgerald M., Haas B., Abouelleil A., Allen A.W., Alvarado L.,
RA Arachchi H.M., Berlin A.M., Chapman S.B., Gainer-Dewar J., Goldberg J.,
RA Griggs A., Gujja S., Hansen M., Howarth C., Imamovic A., Ireland A.,
RA Larimer J., McCowan C., Murphy C., Pearson M., Poon T.W., Priest M.,
RA Roberts A., Saif S., Shea T., Sisk P., Sykes S., Wortman J., Nusbaum C.,
RA Birren B.;
RT "The Genome Sequence of Phytophthora parasitica P10297.";
RL Submitted (NOV-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:ETP32603.1}.
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DR EMBL; ANIY01003959; ETP32603.1; -; Genomic_DNA.
DR AlphaFoldDB; W2YD79; -.
DR EnsemblProtists; ETP32603; ETP32603; F442_18731.
DR Proteomes; UP000018948; Unassembled WGS sequence.
DR GO; GO:0030246; F:carbohydrate binding; IEA:InterPro.
DR GO; GO:0016837; F:carbon-oxygen lyase activity, acting on polysaccharides; IEA:InterPro.
DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro.
DR GO; GO:1901575; P:organic substance catabolic process; IEA:UniProt.
DR CDD; cd10317; RGL4_C; 1.
DR CDD; cd10316; RGL4_M; 1.
DR CDD; cd10320; RGL4_N; 1.
DR Gene3D; 2.70.98.10; -; 1.
DR Gene3D; 2.60.40.1120; Carboxypeptidase-like, regulatory domain; 1.
DR Gene3D; 2.60.120.260; Galactose-binding domain-like; 1.
DR InterPro; IPR011013; Gal_mutarotase_sf_dom.
DR InterPro; IPR008979; Galactose-bd-like_sf.
DR InterPro; IPR014718; GH-type_carb-bd.
DR InterPro; IPR029413; RG-lyase_II.
DR InterPro; IPR029411; RG-lyase_III.
DR InterPro; IPR016590; Rhamnogalacturonase_B.
DR InterPro; IPR015364; RhgB_N.
DR PANTHER; PTHR36574; RHAMNOGALACTURONATE LYASE-RELATED; 1.
DR PANTHER; PTHR36574:SF1; RHAMNOGALACTURONATE LYASE-RELATED; 1.
DR Pfam; PF14683; CBM-like; 1.
DR Pfam; PF14686; fn3_3; 1.
DR Pfam; PF09284; RhgB_N; 1.
DR SUPFAM; SSF74650; Galactose mutarotase-like; 1.
DR SUPFAM; SSF49785; Galactose-binding domain-like; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000018948};
KW Signal {ECO:0000256|SAM:SignalP}.
FT SIGNAL 1..23
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 24..586
FT /note="Rhamnogalacturonan endolyase"
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5004829812"
FT DOMAIN 46..294
FT /note="Rhamnogalacturonase B N-terminal"
FT /evidence="ECO:0000259|Pfam:PF09284"
FT DOMAIN 301..375
FT /note="Rhamnogalacturonan lyase"
FT /evidence="ECO:0000259|Pfam:PF14686"
FT DOMAIN 418..585
FT /note="Rhamnogalacturonan lyase"
FT /evidence="ECO:0000259|Pfam:PF14683"
FT REGION 374..401
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 586 AA; 64178 MW; BA7BED2A3C7D04F5 CRC64;
MLSGRLFRST LLLTSGLLAV AQADTNHATS NLNFDSAEER AATTSFGYKE DGASWVIDSG
AGLTVKVDQG TCDIASMIWN KAELQTWQRK SHINSGLGKI NTSIESLKDK TIQISCKTPG
LEHTYLFRPN ENVIYMGTYH TKEYEMGNLR FIARLARKPM DNPMVPECKI DNMTAIEGHD
VFADSKGITA SKFYSGIPFI DDKVHGVTGD AGGVFFIMSD YAYERSVGGP FFRDMNNQCT
EANELTLCMF SDHTRFEDYR YGFHGPYALI FNDGKQPAVT DVDFDFFQDL NLTGFVPETK
RGSWTGTITD KNGVLSNSSV VVGFSNPDAQ YWVKVDSPSK PFTSPKMVPG TYNTTIYKNQ
LPVSSETITI AAGSAPAPAP ASTEAAAPAP ATNGGRRTQS VEGAKTLTVT YEPVAKPLWR
IGEWDGTPAG FLNADKIHTS HPSDSRMKPW KPLNFTIGTD KDEIFPMAMF RAVNDPITIN
FELTKDQIGA DRTLKVGIPL AQNNGRCSVT VNTKFETKVP LSAAVKTRGV TRGVTLGKYM
FYDYAIPKTA LVEGTNQIKL SIVSGNKDLL GKWLSASVVF DALELV
//
