GenomeNet

Database: UniProt
Entry: W5D3S3_WHEAT
LinkDB: W5D3S3_WHEAT
Original site: W5D3S3_WHEAT 
ID   W5D3S3_WHEAT            Unreviewed;       530 AA.
AC   W5D3S3;
DT   19-MAR-2014, integrated into UniProtKB/TrEMBL.
DT   19-MAR-2014, sequence version 1.
DT   24-JAN-2024, entry version 47.
DE   RecName: Full=UBC core domain-containing protein {ECO:0000259|PROSITE:PS50127};
GN   ORFNames=CFC21_041962 {ECO:0000313|EMBL:KAF7030423.1},
GN   TRAES_3BF073600120CFD_c1 {ECO:0000313|EMBL:CDM83955.1};
OS   Triticum aestivum (Wheat).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Pooideae; Triticodae; Triticeae; Triticinae; Triticum.
OX   NCBI_TaxID=4565 {ECO:0000313|EMBL:CDM83955.1};
RN   [1] {ECO:0000313|EMBL:CDM83955.1}
RP   NUCLEOTIDE SEQUENCE.
RX   PubMed=25035497; DOI=10.1126/science.1249721;
RA   Choulet F., Alberti A., Theil S., Glover N., Barbe V., Daron J.,
RA   Pingault L., Sourdille P., Couloux A., Paux E., Leroy P., Mangenot S.,
RA   Guilhot N., Le Gouis J., Balfourier F., Alaux M., Jamilloux V., Poulain J.,
RA   Durand C., Bellec A., Gaspin C., Safar J., Dolezel J., Rogers J.,
RA   Vandepoele K., Aury J.M., Mayer K., Berges H., Quesneville H., Wincker P.,
RA   Feuillet C.;
RT   "Structural and functional partitioning of bread wheat chromosome 3B.";
RL   Science 345:1249721-1249721(2014).
RN   [2] {ECO:0000313|EMBL:KAF7030423.1}
RP   NUCLEOTIDE SEQUENCE.
RC   TISSUE=Leaf {ECO:0000313|EMBL:KAF7030423.1};
RX   PubMed=29069494;
RA   Zimin A.V., Puiu D., Hall R., Kingan S., Clavijo B.J., Salzberg S.L.;
RT   "The first near-complete assembly of the hexaploid bread wheat genome,
RT   Triticum aestivum.";
RL   Gigascience 6:1-7(2017).
RN   [3] {ECO:0000313|EnsemblPlants:TraesCS3B02G303300.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Chinese Spring
RC   {ECO:0000313|EnsemblPlants:TraesCS3B02G303300.1};
RX   PubMed=30115783; DOI=10.1126/science.aar7191;
RG   International wheat genome sequencing consortium (IWGSC);
RT   "Shifting the limits in wheat research and breeding using a fully annotated
RT   reference genome.";
RL   Science 361:EAAR7191-EAAR7191(2018).
RN   [4] {ECO:0000313|EnsemblPlants:TraesCS3B02G303300.1}
RP   IDENTIFICATION.
RG   EnsemblPlants;
RL   Submitted (OCT-2018) to UniProtKB.
RN   [5] {ECO:0000313|EMBL:KAF7030423.1}
RP   NUCLEOTIDE SEQUENCE.
RC   TISSUE=Leaf {ECO:0000313|EMBL:KAF7030423.1};
RA   Zimin A.V., Puiu D., Shumante A., Alonge M., Salzberg S.L.;
RT   "The second near-complete assembly of the hexaploid bread wheat (Triticum
RT   aestivum) genome.";
RL   Submitted (MAR-2020) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; HG670306; CDM83955.1; -; Genomic_DNA.
DR   EMBL; CM022218; KAF7030423.1; -; Genomic_DNA.
DR   SMR; W5D3S3; -.
DR   STRING; 4565.W5D3S3; -.
DR   PaxDb; 4565-Traes_3B_CA8D8F541-2; -.
DR   EnsemblPlants; TraesCS3B02G303300.1; TraesCS3B02G303300.1; TraesCS3B02G303300.
DR   Gramene; TraesCS3B02G303300.1; TraesCS3B02G303300.1; TraesCS3B02G303300.
DR   Gramene; TraesCS3B03G0780600.1; TraesCS3B03G0780600.1.CDS; TraesCS3B03G0780600.
DR   Gramene; TraesPAR_scaffold_070277_01G000100.1; TraesPAR_scaffold_070277_01G000100.1; TraesPAR_scaffold_070277_01G000100.
DR   Gramene; TraesROB_scaffold_028566_01G000100.1; TraesROB_scaffold_028566_01G000100.1; TraesROB_scaffold_028566_01G000100.
DR   HOGENOM; CLU_025097_5_0_1; -.
DR   OMA; HEFQAQV; -.
DR   OrthoDB; 5311053at2759; -.
DR   Proteomes; UP000019116; Chromosome 3B.
DR   Proteomes; UP000815260; Chromosome 3B.
DR   ExpressionAtlas; W5D3S3; baseline.
DR   GO; GO:0061631; F:ubiquitin conjugating enzyme activity; IBA:GO_Central.
DR   CDD; cd00195; UBCc; 1.
DR   Gene3D; 3.10.110.10; Ubiquitin Conjugating Enzyme; 1.
DR   InterPro; IPR000608; UBQ-conjugat_E2.
DR   InterPro; IPR016135; UBQ-conjugating_enzyme/RWD.
DR   PANTHER; PTHR46116; (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME; 1.
DR   PANTHER; PTHR46116:SF20; OS09G0294300 PROTEIN; 1.
DR   Pfam; PF00179; UQ_con; 1.
DR   SMART; SM00212; UBCc; 1.
DR   SUPFAM; SSF54495; UBC-like; 1.
DR   PROSITE; PS50127; UBC_2; 1.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000019116}.
FT   DOMAIN          268..426
FT                   /note="UBC core"
FT                   /evidence="ECO:0000259|PROSITE:PS50127"
SQ   SEQUENCE   530 AA;  58785 MW;  7BC8740B1F9B5BD1 CRC64;
     MAEGSSRSYP FGGSLVLDDP EVVEVPPEVA AGWNSVRQKR KRAQVAPHEI IELDADDDHD
     GVTIIDAKTS DYKNKQAVGH PVNCWKNAKI GLAAEDIALP SAISAKVVYP WDGLGTYHGG
     PKLPIYGLPT DFAGPSSFAS YPWQSVGTYH TGTLPPAYFD DVLGAVGEEH YAYDEGDFSN
     YSYNTPLMEN DSSFNLNVDH YGFPPSVGLY LPRGHVAPAD STQQRQQVKI VESEIEEKYK
     AFKQFDTVGD HSDHFYLKFR TVKKPSKDWV KRIQHEWKVL GKDLPDTIFV RAYEDRMDLL
     RAVIVGPAGT PYHDGLFFFD VYFPSQYPCK PPQVNYRSGG LRLNPNLYAC GKVCLSLLNT
     WTGSGCEMWN PSTSTMLQVL VSIQALVLNA KPYFNEPGHS MYANTPLGEK QSLAYNEETF
     LLSCRTMLYS LRNPPKHFEH FIGGHFRKYG RDILVGCKAY MGGAQVGCLA GDGVQDVDEG
     DKSCSQNFMC SLEILFKGLI NEFTDLGVGC HEFQAQVVNS GAAADTTLRL
//
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