GenomeNet

Database: UniProt
Entry: W5KHI1_ASTMX
LinkDB: W5KHI1_ASTMX
Original site: W5KHI1_ASTMX 
ID   W5KHI1_ASTMX            Unreviewed;       791 AA.
AC   W5KHI1;
DT   16-APR-2014, integrated into UniProtKB/TrEMBL.
DT   05-DEC-2018, sequence version 2.
DT   24-JAN-2024, entry version 48.
DE   RecName: Full=Tudor domain-containing protein 3 {ECO:0000256|ARBA:ARBA00013421};
OS   Astyanax mexicanus (Blind cave fish) (Astyanax fasciatus mexicanus).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes;
OC   Characoidei; Characidae; Astyanax.
OX   NCBI_TaxID=7994 {ECO:0000313|Ensembl:ENSAMXP00000007043.2, ECO:0000313|Proteomes:UP000018467};
RN   [1] {ECO:0000313|Proteomes:UP000018467}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=female {ECO:0000313|Proteomes:UP000018467};
RA   Jeffery W., Warren W., Wilson R.K.;
RL   Submitted (MAR-2013) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|Proteomes:UP000018467}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=female {ECO:0000313|Proteomes:UP000018467};
RX   PubMed=25329095; DOI=10.1038/ncomms6307;
RA   McGaugh S.E., Gross J.B., Aken B., Blin M., Borowsky R., Chalopin D.,
RA   Hinaux H., Jeffery W.R., Keene A., Ma L., Minx P., Murphy D., O'Quin K.E.,
RA   Retaux S., Rohner N., Searle S.M., Stahl B.A., Tabin C., Volff J.N.,
RA   Yoshizawa M., Warren W.C.;
RT   "The cavefish genome reveals candidate genes for eye loss.";
RL   Nat. Commun. 5:5307-5307(2014).
RN   [3] {ECO:0000313|Ensembl:ENSAMXP00000007043.2}
RP   IDENTIFICATION.
RG   Ensembl;
RL   Submitted (JUL-2023) to UniProtKB.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
CC       Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR   AlphaFoldDB; W5KHI1; -.
DR   STRING; 7994.ENSAMXP00000007043; -.
DR   Ensembl; ENSAMXT00000007043.2; ENSAMXP00000007043.2; ENSAMXG00000006847.2.
DR   eggNOG; KOG3683; Eukaryota.
DR   GeneTree; ENSGT00940000155487; -.
DR   HOGENOM; CLU_022646_0_0_1; -.
DR   InParanoid; W5KHI1; -.
DR   OrthoDB; 228723at2759; -.
DR   Proteomes; UP000018467; Unassembled WGS sequence.
DR   Bgee; ENSAMXG00000006847; Expressed in embryo and 14 other cell types or tissues.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0006325; P:chromatin organization; IEA:UniProtKB-KW.
DR   GO; GO:0006397; P:mRNA processing; IEA:InterPro.
DR   CDD; cd20413; Tudor_TDRD3; 1.
DR   CDD; cd14282; UBA_TDRD3; 1.
DR   Gene3D; 2.30.30.140; -; 1.
DR   Gene3D; 1.10.8.10; DNA helicase RuvA subunit, C-terminal domain; 1.
DR   Gene3D; 2.40.50.770; RecQ-mediated genome instability protein Rmi1, C-terminal domain; 1.
DR   InterPro; IPR042470; RMI1_N_C_sf.
DR   InterPro; IPR013894; RMI1_OB.
DR   InterPro; IPR002999; Tudor.
DR   InterPro; IPR047379; Tudor_TDRD3.
DR   InterPro; IPR015940; UBA.
DR   InterPro; IPR009060; UBA-like_sf.
DR   InterPro; IPR041915; UBA_TDRD3.
DR   PANTHER; PTHR13681; SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATED; 1.
DR   PANTHER; PTHR13681:SF24; TUDOR DOMAIN-CONTAINING PROTEIN 3; 1.
DR   Pfam; PF08585; RMI1_N_C; 1.
DR   Pfam; PF00567; TUDOR; 1.
DR   Pfam; PF00627; UBA; 1.
DR   SMART; SM01161; DUF1767; 1.
DR   SMART; SM00333; TUDOR; 1.
DR   SMART; SM00165; UBA; 1.
DR   SUPFAM; SSF63748; Tudor/PWWP/MBT; 1.
DR   SUPFAM; SSF46934; UBA-like; 1.
DR   PROSITE; PS50304; TUDOR; 1.
DR   PROSITE; PS50030; UBA; 1.
PE   4: Predicted;
KW   Chromatin regulator {ECO:0000256|ARBA:ARBA00022853};
KW   Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW   Reference proteome {ECO:0000313|Proteomes:UP000018467}.
FT   DOMAIN          289..329
FT                   /note="UBA"
FT                   /evidence="ECO:0000259|PROSITE:PS50030"
FT   DOMAIN          695..755
FT                   /note="Tudor"
FT                   /evidence="ECO:0000259|PROSITE:PS50304"
FT   REGION          199..222
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          241..281
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          331..694
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          766..791
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        247..262
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        263..281
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        351..365
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        427..442
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        447..466
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        467..489
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        490..516
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        574..594
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        596..641
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        654..670
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   791 AA;  87538 MW;  34E9DD8670CB22F2 CRC64;
     MSELSAALGR EGWYLTEEGI EECKSSEKEK VTVTDIINVA LNSDLRPIGK SFLPADINSG
     RVEKLEGPCV LQIQRIRNVS APKENEDSQA APRMLRVQMT DGQTMCTGLE FKHLSKISLN
     TPPGTKVKLL GTVQMKNGLL LLDDSKIAVL GGEVDHMIEK WELQRSLAKH SRSNVGAEGG
     PPPFLPFGQK CLRQEEVDSR TLDQRKTLQS SNAAKTASEN DEFEKQRIAA IAEIAKSKEM
     RTFGGGGNAG SNLTNPGSSF KNRDTYQKRR EEREKTWTES KPEGVYRELV DERALRDIME
     MGFNKEAARQ ALLDNNNNVE VALNALLTGV SQPKSAPVEA SRPPPRGKGR GRGRSRQDED
     DEGGGGRPSG PSTLFDFLES KMGAFSIDDS KKPPPQKTQD HPGRMTFPNP ERIPRDAPQP
     KQTNRNDGRP QRNDRPPRFQ RDGDFPKPGT TETTQPASSQ SQPQRWRDGE KGGRGGSERW
     KDDRRDAKGG QMNITSSGNS RSKEQQQGSS GNFYQGSKDY GGPKGYQQVS RDMGPRAQEQ
     VGGSDPLPFR KNQANGPLGP KALDWNVTVP DSKGRPEPHS RRKGKSDRPN SAHFDRNQEP
     IGNLNSAYVP GGKDSTYFQD GGQGQFTKGG GNSNLYLQNG DSDHRRTGLI KPQSSGPPHK
     SSNSHNSAPK KRSGPIKGQR GPEMGEPAEM SSQGCWKPGD QCLALYWEDN KFYRATIDAV
     HPSGSTAVVV FSDYGNCEEV LLHNIKPLHM DMWDDDDVYY ENSLEFRRGG DGQPRRTRPT
     QQYYQPPRAR D
//
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