ID W5LN62_ASTMX Unreviewed; 1849 AA.
AC W5LN62;
DT 16-APR-2014, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 2.
DT 27-MAR-2024, entry version 63.
DE SubName: Full=SET domain containing 1B, histone lysine methyltransferase {ECO:0000313|Ensembl:ENSAMXP00000021274.2};
OS Astyanax mexicanus (Blind cave fish) (Astyanax fasciatus mexicanus).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes;
OC Characoidei; Characidae; Astyanax.
OX NCBI_TaxID=7994 {ECO:0000313|Ensembl:ENSAMXP00000021274.2, ECO:0000313|Proteomes:UP000018467};
RN [1] {ECO:0000313|Proteomes:UP000018467}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=female {ECO:0000313|Proteomes:UP000018467};
RA Jeffery W., Warren W., Wilson R.K.;
RL Submitted (MAR-2013) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Proteomes:UP000018467}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=female {ECO:0000313|Proteomes:UP000018467};
RX PubMed=25329095; DOI=10.1038/ncomms6307;
RA McGaugh S.E., Gross J.B., Aken B., Blin M., Borowsky R., Chalopin D.,
RA Hinaux H., Jeffery W.R., Keene A., Ma L., Minx P., Murphy D., O'Quin K.E.,
RA Retaux S., Rohner N., Searle S.M., Stahl B.A., Tabin C., Volff J.N.,
RA Yoshizawa M., Warren W.C.;
RT "The cavefish genome reveals candidate genes for eye loss.";
RL Nat. Commun. 5:5307-5307(2014).
RN [3] {ECO:0000313|Ensembl:ENSAMXP00000021274.2}
RP IDENTIFICATION.
RG Ensembl;
RL Submitted (NOV-2023) to UniProtKB.
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DR STRING; 7994.ENSAMXP00000021274; -.
DR Ensembl; ENSAMXT00000021274.2; ENSAMXP00000021274.2; ENSAMXG00000020648.2.
DR eggNOG; KOG1080; Eukaryota.
DR GeneTree; ENSGT00940000154575; -.
DR HOGENOM; CLU_001226_0_0_1; -.
DR InParanoid; W5LN62; -.
DR OrthoDB; 950362at2759; -.
DR Proteomes; UP000018467; Unassembled WGS sequence.
DR Bgee; ENSAMXG00000020648; Expressed in camera-type eye and 14 other cell types or tissues.
DR GO; GO:0048188; C:Set1C/COMPASS complex; IEA:InterPro.
DR GO; GO:0140999; F:histone H3K4 trimethyltransferase activity; IEA:UniProtKB-EC.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0032259; P:methylation; IEA:UniProtKB-KW.
DR CDD; cd19169; SET_SETD1; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR Gene3D; 2.170.270.10; SET domain; 1.
DR InterPro; IPR024657; COMPASS_Set1_N-SET.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR003616; Post-SET_dom.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR044570; Set1-like.
DR InterPro; IPR001214; SET_dom.
DR InterPro; IPR046341; SET_dom_sf.
DR InterPro; IPR037841; SET_SETD1A/B.
DR PANTHER; PTHR45814; HISTONE-LYSINE N-METHYLTRANSFERASE SETD1; 1.
DR PANTHER; PTHR45814:SF1; HISTONE-LYSINE N-METHYLTRANSFERASE SETD1B; 1.
DR Pfam; PF11764; N-SET; 1.
DR Pfam; PF00076; RRM_1; 1.
DR Pfam; PF00856; SET; 1.
DR SMART; SM01291; N-SET; 1.
DR SMART; SM00508; PostSET; 1.
DR SMART; SM00360; RRM; 1.
DR SMART; SM00317; SET; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR SUPFAM; SSF82199; SET domain; 1.
DR PROSITE; PS50868; POST_SET; 1.
DR PROSITE; PS50102; RRM; 1.
DR PROSITE; PS50280; SET; 1.
PE 4: Predicted;
KW Chromatin regulator {ECO:0000256|ARBA:ARBA00022853};
KW Methyltransferase {ECO:0000256|ARBA:ARBA00022603};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000018467};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|PROSITE-
KW ProRule:PRU00176}; S-adenosyl-L-methionine {ECO:0000256|ARBA:ARBA00022691};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 103..191
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 1710..1827
FT /note="SET"
FT /evidence="ECO:0000259|PROSITE:PS50280"
FT DOMAIN 1833..1849
FT /note="Post-SET"
FT /evidence="ECO:0000259|PROSITE:PS50868"
FT REGION 1..35
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 242..334
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 349..614
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 840..866
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 903..1367
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1381..1519
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1655..1684
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..18
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 242..313
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 314..329
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 359..408
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 436..468
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 474..504
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 507..521
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 938..964
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 965..980
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 981..1007
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1008..1025
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1026..1052
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1053..1076
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1188..1202
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1210..1228
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1246..1267
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1268..1291
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1344..1358
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1404..1418
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1446..1469
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1849 AA; 202748 MW; ED1204563FBBB1D8 CRC64;
MSRPGERDRG RVSEEHNRRT SAPMNGMENS SGERRGHHWR SYKLIIDPAL RTGSHKLYRY
DGQHFSSPNS GIPPVDIVRD PRIGRLWTKY KETDLPVPKF KIDECYVGRI PPKEVTFARL
NDNIREGFLT DMCKKFGEIE EVEILYNPKN KKHLGIAKVM FGSVRAAKDA VQNLHNTSVM
GNIIHVELDP KGENRLRYVE RLVNGSYTPL TLPVGEESCE VSPRSLAEAL LACEPLRRLS
ESSSSVVAGT VTPGSTSTPL SLDTAYSSLR QETPQSQGTP HTPRPTGTPF SQDSTYSSRQ
GTPALQPNRT EGSGGYKSRR HETKFQNAYK RIPQRHYVHL AGGAYRANAE QSSNFKQHQP
PEPPSPAFLN TPPLPVTPSF KPASFPTYQP PLPPVYPHAE PPAYPPQPLQ RELEYLRPQA
PPPSTPDFMT VRDRPKTPPM PEPPPEPTTQ PTACTPPPST PDPCPSPAPE VERNSLDSRI
EMLLKEKRTK LPFLTDRGDS DGEVRMEGSP ISSSSSQMSP IPPCPAQRPS RPSSTGLEDI
SPTPLPDSDE DEPIAGTASL MLRPRSTSPP NAHGLNMTGG PRTPTEKPDS GMQSSGEDME
ISDDEMPGTP ISGGDCAKGI VVNSALSPLA PQALGIPPPG FPPLPHHPQA GYALTHHHLG
PHTTVPTPHP THLAAHLMPP LPPYPGMVPM MPVDLMSCLP QWGSVHMSFQ MQTQVLSRIA
QSQHPYPYPH YLSGAAGAGA SAGAMQFGGP YQPLSMVGTP SGGVGHGQQW PLPSMPRYNP
TVPPPRYDTQ KEDSHKATVD GVLMVIVKEL KAIMKRDLNR KMVEVVAFRA FDEWWEKKER
SAKATLTPVK PGEGKEEEKE RAKPKETLSA RLLENWSKGE GLGYESIGLG IGLRGAIRLP
SFKVKRKEPP DPASSAENKR ARPSTPVDDE LDDEERTDLP ADGTRLDADN SAAKRRHSRP
VELDSEGEEE EEEEEETSGR EELSLSDREE EPEGETSERL STGKEPGDDE EEKDEESESE
ASSSSDSSDE EGSSSSKSGP DSSSSSSESS SEYDSSSEEE REEEEEEEEA EVAMEVGEEE
ETRTSSTSSS SSSSSSDEEE ESEVKALSTP PGPPLEKECE SGQQGAEEAV PPNRTAVENL
RPPSPKGLPV EEQDVDVDIP KVEVSVEDVG TLRPLTPTGS LADSDLDVRP KSQSEEEVPR
TPGRDGPAPS ELDTNTQMTS SGQSIHLPLP TSHALLPPPP DSCGRVRLQT DEEVPRTPGR
DLRKGQSTET APETPGSDAP LTGNSLALSL ALSSPHVPGS PFSYPAQSPV LSAGIPRTPG
RDLTFTPVFP DPAASSVGPL HRKASSDSLE EKPVFKEPAL KEPPLSAYLP TTTAASLTLP
AAAAAASPQE LSAVPQTSPP ASIEGSTPLP PTDQPIPLTE IPVPLDVTPS KKKAGRAKAK
KPPTPVTPED ALPEPPPVTP SLPPEPPVKD LFPDRPDQAF GRPDAEPQLP EPEPDTDDLD
DLGQTVLPPS PGVHDDMLYE PVQKTRRQRR SWEELLLSMH SPAASPPRPS YVPRSEFEEM
TILYDIWNDG IDEEDIKYLK ITYDKLLQQD NVNDWLNDTL WVHHPTTSGG SLPGLKKKRR
EDGMRDHVTG CARSEGYYKI DKKDKLKYLI SSRPQFDEPD KDTQGKSIPA QPHASTRAGS
ERRSEQRRLL SSFSCDSDLL KFNQLKFRKK KIRFCKSHIH DWGLFAMEPI AADEMVIEYV
GQNIRQVIAD MREKRYEEEG IGSSYMFRVD HDTIIDATKC GNFARFINHS CNPNCYAKVI
TVESQKKIVI YSRQPINVNE EITYDYKFPI EDEKIPCLCG AENCRGTLN
//
