ID W5LTC9_ASTMX Unreviewed; 585 AA.
AC W5LTC9;
DT 16-APR-2014, integrated into UniProtKB/TrEMBL.
DT 05-DEC-2018, sequence version 2.
DT 24-JAN-2024, entry version 53.
DE SubName: Full=Zinc finger and BTB domain-containing protein 18 {ECO:0000313|Ensembl:ENSAMXP00000026340.2};
OS Astyanax mexicanus (Blind cave fish) (Astyanax fasciatus mexicanus).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes;
OC Characoidei; Characidae; Astyanax.
OX NCBI_TaxID=7994 {ECO:0000313|Ensembl:ENSAMXP00000026340.2, ECO:0000313|Proteomes:UP000018467};
RN [1] {ECO:0000313|Proteomes:UP000018467}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=female {ECO:0000313|Proteomes:UP000018467};
RA Jeffery W., Warren W., Wilson R.K.;
RL Submitted (MAR-2013) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Proteomes:UP000018467}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=female {ECO:0000313|Proteomes:UP000018467};
RX PubMed=25329095; DOI=10.1038/ncomms6307;
RA McGaugh S.E., Gross J.B., Aken B., Blin M., Borowsky R., Chalopin D.,
RA Hinaux H., Jeffery W.R., Keene A., Ma L., Minx P., Murphy D., O'Quin K.E.,
RA Retaux S., Rohner N., Searle S.M., Stahl B.A., Tabin C., Volff J.N.,
RA Yoshizawa M., Warren W.C.;
RT "The cavefish genome reveals candidate genes for eye loss.";
RL Nat. Commun. 5:5307-5307(2014).
RN [3] {ECO:0000313|Ensembl:ENSAMXP00000026340.2}
RP IDENTIFICATION.
RG Ensembl;
RL Submitted (JUL-2023) to UniProtKB.
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DR AlphaFoldDB; W5LTC9; -.
DR Ensembl; ENSAMXT00000026361.2; ENSAMXP00000026340.2; ENSAMXG00000025635.2.
DR eggNOG; KOG1721; Eukaryota.
DR GeneTree; ENSGT00940000155092; -.
DR HOGENOM; CLU_034521_0_0_1; -.
DR InParanoid; W5LTC9; -.
DR OrthoDB; 783166at2759; -.
DR Proteomes; UP000018467; Unassembled WGS sequence.
DR Bgee; ENSAMXG00000025635; Expressed in muscle tissue and 8 other cell types or tissues.
DR CDD; cd18325; BTB_POZ_ZBTB18_2-like; 1.
DR Gene3D; 3.30.160.60; Classic Zinc Finger; 3.
DR InterPro; IPR000210; BTB/POZ_dom.
DR InterPro; IPR011333; SKP1/BTB/POZ_sf.
DR InterPro; IPR036236; Znf_C2H2_sf.
DR InterPro; IPR013087; Znf_C2H2_type.
DR PANTHER; PTHR24394:SF20; ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 42; 1.
DR PANTHER; PTHR24394; ZINC FINGER PROTEIN; 1.
DR Pfam; PF00651; BTB; 1.
DR Pfam; PF00096; zf-C2H2; 3.
DR Pfam; PF13894; zf-C2H2_4; 1.
DR SMART; SM00225; BTB; 1.
DR SMART; SM00355; ZnF_C2H2; 4.
DR SUPFAM; SSF57667; beta-beta-alpha zinc fingers; 2.
DR SUPFAM; SSF54695; POZ domain; 1.
DR PROSITE; PS50097; BTB; 1.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 4.
DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 4.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00042};
KW Reference proteome {ECO:0000313|Proteomes:UP000018467};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00042};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00042}.
FT DOMAIN 41..108
FT /note="BTB"
FT /evidence="ECO:0000259|PROSITE:PS50097"
FT DOMAIN 455..482
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 496..523
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 524..551
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT DOMAIN 552..575
FT /note="C2H2-type"
FT /evidence="ECO:0000259|PROSITE:PS50157"
FT REGION 174..213
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 229..312
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 342..368
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 402..445
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 291..307
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 342..358
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 402..424
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 585 AA; 63208 MW; AB570D34FB7A6835 CRC64;
MSSALLKCCS DEGYERRMEF PDHSRQLLQC LSQQRHQGFL CDCTVLVGEA RFKAHRAVLA
SCSMYFHLFY RDQLDKRDVV HLNSDIVTAP AFGLLLEFMY EGKLEFSALP VEDVLAAASY
LHMYDIVKVC KGRLKDKELC CPDEKLVDGA GLSCLDRESS SDGELQPGKV QQIPLRAPPA
DDMDTSDGGA AVTDCDRPAP VRQKANGHPA GSLDLVGVNY VSGEAEPRVQ TAGKTKAGVS
GPAAAPSQRS RAADDTDCAL DLSFKPPSGR DGAGQLALDS QQQGTEPLVH SEHDALSERE
DRAGGPESRR FGNLVTGFTT LFAGSGGSGP ALEEHLMMQE EEEEEEDMVE EEEEEEQQEE
RMRGGGVGGG IGGRVGALVV GVGVGVGVGV GMGIGVGGCV RSHGREESED GRLESRVVPA
RLLGDSEDDD EDELASSDIS TSSGALLPTG GPPVCVCPLC SKAFPSPHTL QLHLSSHFRD
RDSHTRSKLS PDGSAPTCSQ CGKTFSCMYT LKRHERTHSG EKPYTCGQCG KSFQYSHNLS
RHAVVHTREK PHACKWCERR FTQSGDLYRH IRKFHCALVK TLAIG
//