GenomeNet

Database: UniProt
Entry: W5LTC9_ASTMX
LinkDB: W5LTC9_ASTMX
Original site: W5LTC9_ASTMX 
ID   W5LTC9_ASTMX            Unreviewed;       585 AA.
AC   W5LTC9;
DT   16-APR-2014, integrated into UniProtKB/TrEMBL.
DT   05-DEC-2018, sequence version 2.
DT   24-JAN-2024, entry version 53.
DE   SubName: Full=Zinc finger and BTB domain-containing protein 18 {ECO:0000313|Ensembl:ENSAMXP00000026340.2};
OS   Astyanax mexicanus (Blind cave fish) (Astyanax fasciatus mexicanus).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes;
OC   Characoidei; Characidae; Astyanax.
OX   NCBI_TaxID=7994 {ECO:0000313|Ensembl:ENSAMXP00000026340.2, ECO:0000313|Proteomes:UP000018467};
RN   [1] {ECO:0000313|Proteomes:UP000018467}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=female {ECO:0000313|Proteomes:UP000018467};
RA   Jeffery W., Warren W., Wilson R.K.;
RL   Submitted (MAR-2013) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|Proteomes:UP000018467}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=female {ECO:0000313|Proteomes:UP000018467};
RX   PubMed=25329095; DOI=10.1038/ncomms6307;
RA   McGaugh S.E., Gross J.B., Aken B., Blin M., Borowsky R., Chalopin D.,
RA   Hinaux H., Jeffery W.R., Keene A., Ma L., Minx P., Murphy D., O'Quin K.E.,
RA   Retaux S., Rohner N., Searle S.M., Stahl B.A., Tabin C., Volff J.N.,
RA   Yoshizawa M., Warren W.C.;
RT   "The cavefish genome reveals candidate genes for eye loss.";
RL   Nat. Commun. 5:5307-5307(2014).
RN   [3] {ECO:0000313|Ensembl:ENSAMXP00000026340.2}
RP   IDENTIFICATION.
RG   Ensembl;
RL   Submitted (JUL-2023) to UniProtKB.
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DR   AlphaFoldDB; W5LTC9; -.
DR   Ensembl; ENSAMXT00000026361.2; ENSAMXP00000026340.2; ENSAMXG00000025635.2.
DR   eggNOG; KOG1721; Eukaryota.
DR   GeneTree; ENSGT00940000155092; -.
DR   HOGENOM; CLU_034521_0_0_1; -.
DR   InParanoid; W5LTC9; -.
DR   OrthoDB; 783166at2759; -.
DR   Proteomes; UP000018467; Unassembled WGS sequence.
DR   Bgee; ENSAMXG00000025635; Expressed in muscle tissue and 8 other cell types or tissues.
DR   CDD; cd18325; BTB_POZ_ZBTB18_2-like; 1.
DR   Gene3D; 3.30.160.60; Classic Zinc Finger; 3.
DR   InterPro; IPR000210; BTB/POZ_dom.
DR   InterPro; IPR011333; SKP1/BTB/POZ_sf.
DR   InterPro; IPR036236; Znf_C2H2_sf.
DR   InterPro; IPR013087; Znf_C2H2_type.
DR   PANTHER; PTHR24394:SF20; ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 42; 1.
DR   PANTHER; PTHR24394; ZINC FINGER PROTEIN; 1.
DR   Pfam; PF00651; BTB; 1.
DR   Pfam; PF00096; zf-C2H2; 3.
DR   Pfam; PF13894; zf-C2H2_4; 1.
DR   SMART; SM00225; BTB; 1.
DR   SMART; SM00355; ZnF_C2H2; 4.
DR   SUPFAM; SSF57667; beta-beta-alpha zinc fingers; 2.
DR   SUPFAM; SSF54695; POZ domain; 1.
DR   PROSITE; PS50097; BTB; 1.
DR   PROSITE; PS00028; ZINC_FINGER_C2H2_1; 4.
DR   PROSITE; PS50157; ZINC_FINGER_C2H2_2; 4.
PE   4: Predicted;
KW   Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00042};
KW   Reference proteome {ECO:0000313|Proteomes:UP000018467};
KW   Zinc {ECO:0000256|PROSITE-ProRule:PRU00042};
KW   Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00042}.
FT   DOMAIN          41..108
FT                   /note="BTB"
FT                   /evidence="ECO:0000259|PROSITE:PS50097"
FT   DOMAIN          455..482
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          496..523
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          524..551
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          552..575
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   REGION          174..213
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          229..312
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          342..368
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          402..445
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        291..307
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        342..358
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        402..424
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   585 AA;  63208 MW;  AB570D34FB7A6835 CRC64;
     MSSALLKCCS DEGYERRMEF PDHSRQLLQC LSQQRHQGFL CDCTVLVGEA RFKAHRAVLA
     SCSMYFHLFY RDQLDKRDVV HLNSDIVTAP AFGLLLEFMY EGKLEFSALP VEDVLAAASY
     LHMYDIVKVC KGRLKDKELC CPDEKLVDGA GLSCLDRESS SDGELQPGKV QQIPLRAPPA
     DDMDTSDGGA AVTDCDRPAP VRQKANGHPA GSLDLVGVNY VSGEAEPRVQ TAGKTKAGVS
     GPAAAPSQRS RAADDTDCAL DLSFKPPSGR DGAGQLALDS QQQGTEPLVH SEHDALSERE
     DRAGGPESRR FGNLVTGFTT LFAGSGGSGP ALEEHLMMQE EEEEEEDMVE EEEEEEQQEE
     RMRGGGVGGG IGGRVGALVV GVGVGVGVGV GMGIGVGGCV RSHGREESED GRLESRVVPA
     RLLGDSEDDD EDELASSDIS TSSGALLPTG GPPVCVCPLC SKAFPSPHTL QLHLSSHFRD
     RDSHTRSKLS PDGSAPTCSQ CGKTFSCMYT LKRHERTHSG EKPYTCGQCG KSFQYSHNLS
     RHAVVHTREK PHACKWCERR FTQSGDLYRH IRKFHCALVK TLAIG
//
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