ID W5M0R2_LEPOC Unreviewed; 568 AA.
AC W5M0R2;
DT 16-APR-2014, integrated into UniProtKB/TrEMBL.
DT 16-APR-2014, sequence version 1.
DT 24-JAN-2024, entry version 56.
DE RecName: Full=Polypyrimidine tract-binding protein 1 {ECO:0000256|ARBA:ARBA00019540};
OS Lepisosteus oculatus (Spotted gar).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae;
OC Lepisosteus.
OX NCBI_TaxID=7918 {ECO:0000313|Ensembl:ENSLOCP00000001969.1, ECO:0000313|Proteomes:UP000018468};
RN [1] {ECO:0000313|Proteomes:UP000018468}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA Di Palma F., Alfoldi J., Johnson J., Berlin A., Gnerre S., Jaffe D.,
RA MacCallum I., Young S., Walker B.J., Lander E.S., Lindblad-Toh K.;
RT "The Draft Genome of Lepisosteus oculatus.";
RL Submitted (DEC-2011) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Ensembl:ENSLOCP00000001969.1}
RP IDENTIFICATION.
RG Ensembl;
RL Submitted (JUL-2023) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; AHAT01011242; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AHAT01011243; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; XP_015221093.1; XM_015365607.1.
DR AlphaFoldDB; W5M0R2; -.
DR STRING; 7918.ENSLOCP00000001969; -.
DR Ensembl; ENSLOCT00000001974.1; ENSLOCP00000001969.1; ENSLOCG00000001702.1.
DR GeneID; 102688819; -.
DR KEGG; loc:102688819; -.
DR CTD; 321220; -.
DR eggNOG; KOG1190; Eukaryota.
DR GeneTree; ENSGT01050000244924; -.
DR HOGENOM; CLU_015171_7_1_1; -.
DR InParanoid; W5M0R2; -.
DR OMA; IQYAEPQ; -.
DR OrthoDB; 4825346at2759; -.
DR Proteomes; UP000018468; Linkage group LG19.
DR Bgee; ENSLOCG00000001702; Expressed in zone of skin and 13 other cell types or tissues.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR GO; GO:0045595; P:regulation of cell differentiation; IBA:GO_Central.
DR GO; GO:0043484; P:regulation of RNA splicing; IBA:GO_Central.
DR GO; GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
DR CDD; cd12777; RRM1_PTBP1; 1.
DR CDD; cd12693; RRM2_PTBP1_like; 1.
DR CDD; cd12695; RRM3_PTBP1; 1.
DR Gene3D; 3.30.70.330; -; 4.
DR InterPro; IPR006536; HnRNP-L/PTB.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR021790; PTBP1-like_RRM2.
DR InterPro; IPR035000; PTBP1_RRM1.
DR InterPro; IPR035001; PTBP1_RRM3.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR NCBIfam; TIGR01649; hnRNP-L_PTB; 1.
DR PANTHER; PTHR15592; MATRIN 3/NUCLEAR PROTEIN 220-RELATED; 1.
DR PANTHER; PTHR15592:SF19; POLYPYRIMIDINE TRACT-BINDING PROTEIN 1; 1.
DR Pfam; PF00076; RRM_1; 1.
DR Pfam; PF13893; RRM_5; 1.
DR Pfam; PF11835; RRM_8; 1.
DR SMART; SM00360; RRM; 4.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 3.
DR PROSITE; PS50102; RRM; 4.
PE 4: Predicted;
KW Acetylation {ECO:0000256|ARBA:ARBA00022990};
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000018468};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|PROSITE-
KW ProRule:PRU00176}; Ubl conjugation {ECO:0000256|ARBA:ARBA00022843}.
FT DOMAIN 75..159
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 195..271
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 374..448
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 491..566
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
SQ SEQUENCE 568 AA; 61469 MW; 36B9C33786AE0EEB CRC64;
MDGRLETDLY PLGSSYATEK DSVHDITVGT KRGSDELFSS CVSNGPYIMS SSGAANGNDS
KKFKGDFRSP SAPSRVIHVR KLPNDINEAE VISLGLPFGK VTNLLMLKGK NQAFLEMNTE
EAAQTMVSYY SSVTPVIRNH PIFMQYSNHK ELKTDNSPNQ VRAQAALQAV NAVQTGSMSM
SSVDTSGMGS QSPVLRIIVE NLFYPVTLDV LHQIFSKFGT VLKIITFTKN NQFQALLQYA
DGLTAQHAKL ALDGQNIYNA CCTLRINFSK LTSLNVKYNN DKSRDYTRPD LPTGDSQPSI
DHQAMAAAFG APGIISASPY AGAHGFPPAF AIQQAAGLTM PGVPGALASL AIPGAAAAAA
AGRLGIHGLA GGHSVLLVSN LNAERVTPQC LFILFGVYGD VMRVKILFNK KENALVQMAD
GTQAQLAMSH LNGQKLHGKA IRVTLSKHTT VQLPREGQED QGLTKDFSSS PLHRFKKPGS
KNYQNIFPPS ATLHLSNIPP SVVEDDLKML FASSGAVVKA FKFFQKDRKM ALIQMGSVEE
AIQCLIEYHN HDLGENHHLR VSFSKSTI
//