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Database: UniProt
Entry: W5M0R2_LEPOC
LinkDB: W5M0R2_LEPOC
Original site: W5M0R2_LEPOC 
ID   W5M0R2_LEPOC            Unreviewed;       568 AA.
AC   W5M0R2;
DT   16-APR-2014, integrated into UniProtKB/TrEMBL.
DT   16-APR-2014, sequence version 1.
DT   24-JAN-2024, entry version 56.
DE   RecName: Full=Polypyrimidine tract-binding protein 1 {ECO:0000256|ARBA:ARBA00019540};
OS   Lepisosteus oculatus (Spotted gar).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae;
OC   Lepisosteus.
OX   NCBI_TaxID=7918 {ECO:0000313|Ensembl:ENSLOCP00000001969.1, ECO:0000313|Proteomes:UP000018468};
RN   [1] {ECO:0000313|Proteomes:UP000018468}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA   Di Palma F., Alfoldi J., Johnson J., Berlin A., Gnerre S., Jaffe D.,
RA   MacCallum I., Young S., Walker B.J., Lander E.S., Lindblad-Toh K.;
RT   "The Draft Genome of Lepisosteus oculatus.";
RL   Submitted (DEC-2011) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|Ensembl:ENSLOCP00000001969.1}
RP   IDENTIFICATION.
RG   Ensembl;
RL   Submitted (JUL-2023) to UniProtKB.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR   EMBL; AHAT01011242; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; AHAT01011243; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   RefSeq; XP_015221093.1; XM_015365607.1.
DR   AlphaFoldDB; W5M0R2; -.
DR   STRING; 7918.ENSLOCP00000001969; -.
DR   Ensembl; ENSLOCT00000001974.1; ENSLOCP00000001969.1; ENSLOCG00000001702.1.
DR   GeneID; 102688819; -.
DR   KEGG; loc:102688819; -.
DR   CTD; 321220; -.
DR   eggNOG; KOG1190; Eukaryota.
DR   GeneTree; ENSGT01050000244924; -.
DR   HOGENOM; CLU_015171_7_1_1; -.
DR   InParanoid; W5M0R2; -.
DR   OMA; IQYAEPQ; -.
DR   OrthoDB; 4825346at2759; -.
DR   Proteomes; UP000018468; Linkage group LG19.
DR   Bgee; ENSLOCG00000001702; Expressed in zone of skin and 13 other cell types or tissues.
DR   GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR   GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR   GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR   GO; GO:0045595; P:regulation of cell differentiation; IBA:GO_Central.
DR   GO; GO:0043484; P:regulation of RNA splicing; IBA:GO_Central.
DR   GO; GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
DR   CDD; cd12777; RRM1_PTBP1; 1.
DR   CDD; cd12693; RRM2_PTBP1_like; 1.
DR   CDD; cd12695; RRM3_PTBP1; 1.
DR   Gene3D; 3.30.70.330; -; 4.
DR   InterPro; IPR006536; HnRNP-L/PTB.
DR   InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR   InterPro; IPR021790; PTBP1-like_RRM2.
DR   InterPro; IPR035000; PTBP1_RRM1.
DR   InterPro; IPR035001; PTBP1_RRM3.
DR   InterPro; IPR035979; RBD_domain_sf.
DR   InterPro; IPR000504; RRM_dom.
DR   NCBIfam; TIGR01649; hnRNP-L_PTB; 1.
DR   PANTHER; PTHR15592; MATRIN 3/NUCLEAR PROTEIN 220-RELATED; 1.
DR   PANTHER; PTHR15592:SF19; POLYPYRIMIDINE TRACT-BINDING PROTEIN 1; 1.
DR   Pfam; PF00076; RRM_1; 1.
DR   Pfam; PF13893; RRM_5; 1.
DR   Pfam; PF11835; RRM_8; 1.
DR   SMART; SM00360; RRM; 4.
DR   SUPFAM; SSF54928; RNA-binding domain, RBD; 3.
DR   PROSITE; PS50102; RRM; 4.
PE   4: Predicted;
KW   Acetylation {ECO:0000256|ARBA:ARBA00022990};
KW   mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW   mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Reference proteome {ECO:0000313|Proteomes:UP000018468};
KW   RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|PROSITE-
KW   ProRule:PRU00176}; Ubl conjugation {ECO:0000256|ARBA:ARBA00022843}.
FT   DOMAIN          75..159
FT                   /note="RRM"
FT                   /evidence="ECO:0000259|PROSITE:PS50102"
FT   DOMAIN          195..271
FT                   /note="RRM"
FT                   /evidence="ECO:0000259|PROSITE:PS50102"
FT   DOMAIN          374..448
FT                   /note="RRM"
FT                   /evidence="ECO:0000259|PROSITE:PS50102"
FT   DOMAIN          491..566
FT                   /note="RRM"
FT                   /evidence="ECO:0000259|PROSITE:PS50102"
SQ   SEQUENCE   568 AA;  61469 MW;  36B9C33786AE0EEB CRC64;
     MDGRLETDLY PLGSSYATEK DSVHDITVGT KRGSDELFSS CVSNGPYIMS SSGAANGNDS
     KKFKGDFRSP SAPSRVIHVR KLPNDINEAE VISLGLPFGK VTNLLMLKGK NQAFLEMNTE
     EAAQTMVSYY SSVTPVIRNH PIFMQYSNHK ELKTDNSPNQ VRAQAALQAV NAVQTGSMSM
     SSVDTSGMGS QSPVLRIIVE NLFYPVTLDV LHQIFSKFGT VLKIITFTKN NQFQALLQYA
     DGLTAQHAKL ALDGQNIYNA CCTLRINFSK LTSLNVKYNN DKSRDYTRPD LPTGDSQPSI
     DHQAMAAAFG APGIISASPY AGAHGFPPAF AIQQAAGLTM PGVPGALASL AIPGAAAAAA
     AGRLGIHGLA GGHSVLLVSN LNAERVTPQC LFILFGVYGD VMRVKILFNK KENALVQMAD
     GTQAQLAMSH LNGQKLHGKA IRVTLSKHTT VQLPREGQED QGLTKDFSSS PLHRFKKPGS
     KNYQNIFPPS ATLHLSNIPP SVVEDDLKML FASSGAVVKA FKFFQKDRKM ALIQMGSVEE
     AIQCLIEYHN HDLGENHHLR VSFSKSTI
//
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