ID W5U7Q8_ICTPU Unreviewed; 337 AA.
AC W5U7Q8;
DT 16-APR-2014, integrated into UniProtKB/TrEMBL.
DT 16-APR-2014, sequence version 1.
DT 27-MAR-2024, entry version 44.
DE RecName: Full=LIM domain-containing protein {ECO:0000256|PIRNR:PIRNR038003};
GN Name=LIMS1 {ECO:0000313|EMBL:AHH37805.1};
GN Synonyms=lims1 {ECO:0000313|RefSeq:XP_017333075.1};
OS Ictalurus punctatus (Channel catfish) (Silurus punctatus).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes;
OC Ictaluridae; Ictalurus.
OX NCBI_TaxID=7998 {ECO:0000313|EMBL:AHH37805.1};
RN [1] {ECO:0000313|EMBL:AHH37805.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Mixed {ECO:0000313|EMBL:AHH37805.1};
RX PubMed=23127152; DOI=10.1186/1471-2164-13-595;
RA Liu S., Zhang Y., Zhou Z., Waldbieser G., Sun F., Lu J., Zhang J.,
RA Jiang Y., Zhang H., Wang X., Rajendran K.V., Khoo L., Kucuktas H.,
RA Peatman E., Liu Z.;
RT "Efficient assembly and annotation of the transcriptome of catfish by RNA-
RT Seq analysis of a doubled haploid homozygote.";
RL BMC Genomics 13:595-595(2012).
RN [2] {ECO:0000313|RefSeq:XP_017333075.1}
RP IDENTIFICATION.
RC TISSUE=Blood {ECO:0000313|RefSeq:XP_017333075.1};
RG RefSeq;
RL Submitted (NOV-2023) to UniProtKB.
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DR EMBL; JT406971; AHH37805.1; -; mRNA.
DR RefSeq; XP_017333075.1; XM_017477586.2.
DR STRING; 7998.ENSIPUP00000013837; -.
DR Ensembl; ENSIPUT00000014444; ENSIPUP00000013860; ENSIPUG00000009395.
DR GeneID; 108270729; -.
DR KEGG; ipu:108270729; -.
DR CTD; 3987; -.
DR OMA; ICARCSE; -.
DR OrthoDB; 370973at2759; -.
DR Proteomes; UP000221080; Chromosome 10.
DR GO; GO:0005925; C:focal adhesion; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd09331; LIM1_PINCH; 1.
DR CDD; cd09332; LIM2_PINCH; 1.
DR CDD; cd09333; LIM3_PINCH; 1.
DR CDD; cd09334; LIM4_PINCH; 1.
DR CDD; cd09335; LIM5_PINCH; 1.
DR Gene3D; 2.10.110.10; Cysteine Rich Protein; 5.
DR InterPro; IPR047944; LIMS1/2-like_LIM1.
DR InterPro; IPR047946; PINCH-1/2-like.
DR InterPro; IPR001781; Znf_LIM.
DR PANTHER; PTHR24210; LIM DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR24210:SF0; LIM DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF00412; LIM; 5.
DR PIRSF; PIRSF038003; PINCH; 1.
DR SMART; SM00132; LIM; 5.
DR SUPFAM; SSF57716; Glucocorticoid receptor-like (DNA-binding domain); 6.
DR PROSITE; PS00478; LIM_DOMAIN_1; 2.
DR PROSITE; PS50023; LIM_DOMAIN_2; 4.
PE 2: Evidence at transcript level;
KW LIM domain {ECO:0000256|ARBA:ARBA00023038, ECO:0000256|PIRNR:PIRNR038003};
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00125};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00125}.
FT DOMAIN 20..81
FT /note="LIM zinc-binding"
FT /evidence="ECO:0000259|PROSITE:PS50023"
FT DOMAIN 83..140
FT /note="LIM zinc-binding"
FT /evidence="ECO:0000259|PROSITE:PS50023"
FT DOMAIN 203..262
FT /note="LIM zinc-binding"
FT /evidence="ECO:0000259|PROSITE:PS50023"
FT DOMAIN 263..322
FT /note="LIM zinc-binding"
FT /evidence="ECO:0000259|PROSITE:PS50023"
SQ SEQUENCE 337 AA; 38416 MW; C7B2A4FA2DABE192 CRC64;
MLGVSEMTGS SNMANALANA ACERCKSGFA PAEKIVNSNG ELYHEQCFVC AQCFQQFPEG
LFYEFEGRKY CEHDFQMLFA PCCHQCGEFI IGRVIKAMNN SWHPDCFCCD ICQAVLADVG
FVKNAGRHLC RPCHNREKAR GLGKYFCQKC HAIIDEQPLI FKNDPYHPDH FNCSNCGKEL
TADARELKGE LYCLPCHDKM GVPICGACRR PIEGRVVNAM GKQWHVEHFV CAKCEKPFLG
HRHYERKGLA YCETHYNQLF GDVCYHCNRV IEGDVVSALN KAWCVNCFSC STCNTKLTLK
NKFVEFDMKP VCKKCYEKFP LELKKRLKKL AETVARK
//
