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Database: UniProt
Entry: W6YX04_COCMI
LinkDB: W6YX04_COCMI
Original site: W6YX04_COCMI 
ID   W6YX04_COCMI            Unreviewed;      1449 AA.
AC   W6YX04;
DT   16-APR-2014, integrated into UniProtKB/TrEMBL.
DT   16-APR-2014, sequence version 1.
DT   24-JAN-2024, entry version 38.
DE   RecName: Full=Pre-mRNA-splicing factor {ECO:0000256|PIRNR:PIRNR038901};
GN   ORFNames=COCMIDRAFT_99541 {ECO:0000313|EMBL:EUC43922.1};
OS   Bipolaris oryzae ATCC 44560.
OC   Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes;
OC   Pleosporomycetidae; Pleosporales; Pleosporineae; Pleosporaceae; Bipolaris.
OX   NCBI_TaxID=930090 {ECO:0000313|EMBL:EUC43922.1};
RN   [1] {ECO:0000313|EMBL:EUC43922.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 44560 {ECO:0000313|EMBL:EUC43922.1};
RX   PubMed=23357949; DOI=10.1371/journal.pgen.1003233;
RA   Condon B.J., Leng Y., Wu D., Bushley K.E., Ohm R.A., Otillar R., Martin J.,
RA   Schackwitz W., Grimwood J., MohdZainudin N., Xue C., Wang R., Manning V.A.,
RA   Dhillon B., Tu Z.J., Steffenson B.J., Salamov A., Sun H., Lowry S.,
RA   LaButti K., Han J., Copeland A., Lindquist E., Barry K., Schmutz J.,
RA   Baker S.E., Ciuffetti L.M., Grigoriev I.V., Zhong S., Turgeon B.G.;
RT   "Comparative genome structure, secondary metabolite, and effector coding
RT   capacity across Cochliobolus pathogens.";
RL   PLoS Genet. 9:E1003233-E1003233(2013).
CC   -!- FUNCTION: Involved in mRNA splicing where it associates with cdc5 and
CC       the other cwf proteins as part of the spliceosome.
CC       {ECO:0000256|PIRNR:PIRNR038901}.
CC   -!- SUBUNIT: Belongs to the 40S cdc5-associated complex (or cwf complex), a
CC       spliceosome sub-complex reminiscent of a late-stage spliceosome.
CC       {ECO:0000256|PIRNR:PIRNR038901}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PIRNR:PIRNR038901}.
CC   -!- SIMILARITY: Belongs to the CWF11 family.
CC       {ECO:0000256|PIRNR:PIRNR038901}.
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DR   EMBL; KI964016; EUC43922.1; -; Genomic_DNA.
DR   RefSeq; XP_007689576.1; XM_007691386.1.
DR   STRING; 930090.W6YX04; -.
DR   GeneID; 19129489; -.
DR   KEGG; bor:COCMIDRAFT_99541; -.
DR   eggNOG; KOG1806; Eukaryota.
DR   HOGENOM; CLU_001195_0_0_1; -.
DR   OrthoDB; 7041at2759; -.
DR   GO; GO:0005684; C:U2-type spliceosomal complex; IEA:UniProtKB-UniRule.
DR   GO; GO:0004386; F:helicase activity; IEA:InterPro.
DR   GO; GO:0045292; P:mRNA cis splicing, via spliceosome; IEA:UniProtKB-UniRule.
DR   CDD; cd17935; EEXXQc_AQR; 1.
DR   CDD; cd18808; SF1_C_Upf1; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR   InterPro; IPR048966; Aquarius_b-barrel.
DR   InterPro; IPR048967; Aquarius_insert.
DR   InterPro; IPR032174; Aquarius_N.
DR   InterPro; IPR026300; CWF11_fam.
DR   InterPro; IPR045055; DNA2/NAM7-like.
DR   InterPro; IPR041679; DNA2/NAM7-like_C.
DR   InterPro; IPR041677; DNA2/NAM7_AAA_11.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR047187; SF1_C_Upf1.
DR   PANTHER; PTHR10887; DNA2/NAM7 HELICASE FAMILY; 1.
DR   PANTHER; PTHR10887:SF5; RNA HELICASE AQUARIUS; 1.
DR   Pfam; PF13086; AAA_11; 1.
DR   Pfam; PF13087; AAA_12; 1.
DR   Pfam; PF16399; Aquarius_N_1st; 1.
DR   Pfam; PF21143; Aquarius_N_2nd; 1.
DR   Pfam; PF21144; Aquarius_N_3rd; 1.
DR   PIRSF; PIRSF038901; AQR_cwf11; 1.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
PE   3: Inferred from homology;
KW   mRNA processing {ECO:0000256|PIRNR:PIRNR038901};
KW   mRNA splicing {ECO:0000256|PIRNR:PIRNR038901};
KW   Nucleus {ECO:0000256|PIRNR:PIRNR038901}.
FT   DOMAIN          35..422
FT                   /note="RNA helicase aquarius N-terminal"
FT                   /evidence="ECO:0000259|Pfam:PF16399"
FT   DOMAIN          504..668
FT                   /note="RNA helicase aquarius beta-barrel"
FT                   /evidence="ECO:0000259|Pfam:PF21143"
FT   DOMAIN          716..809
FT                   /note="RNA helicase aquarius insertion"
FT                   /evidence="ECO:0000259|Pfam:PF21144"
FT   DOMAIN          821..1117
FT                   /note="DNA2/NAM7 helicase helicase"
FT                   /evidence="ECO:0000259|Pfam:PF13086"
FT   DOMAIN          1128..1320
FT                   /note="DNA2/NAM7 helicase-like C-terminal"
FT                   /evidence="ECO:0000259|Pfam:PF13087"
FT   REGION          767..811
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1403..1449
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        770..784
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1449 AA;  165237 MW;  700B69386441348E CRC64;
     MSSTTSPGAS AAHAPDLANL HARPTVADLH GENHFAQVAR KNWLAAKKTP KVRPEVVKKE
     LWDQLESADF AYSSLLILEN LQLLERYLWP GFTEDASNYH HLLLALMVNV KRRENLSSWE
     HFSTKPAEFS SFFRRILSMT VDPSQPSKIR TQLISFVIGA FQSLDSGLVR KECAPLVGIS
     IWQNLHSDAV REQHFEQHSM LRKAWRAASK RFDAGDDALQ ARLRFERSWL YTLLLDFIDR
     LYNSSNSQDM RDNMAYCERF MELLIDLQSQ LPTRRYVNTL LKDLNMLSAI RLSPMYADED
     NGLFRDLFDL LSHFTNFSIE DQTGRQLSKL EYDQQHYDLL SKLQRTGYAA FQEKLQLMAL
     ANYKSIGNRE ELDGHLRTLS DEELVELCSL MGLRTEYPAT TYLVRDRAFY METLIMLVEQ
     RPTFKDAVRD MPVLPTEKIL YETTFLRNES YDGSRPLAIP KLNLQYLTMG DFLWRSFILY
     RAESFYGIRK DMEDVVKRVK PKGRGVNTKF TGVSKMSLPI MKPAIVDVAP SRVGEEHPAY
     VRAEIILDVS RLQYPVRRDW EQLRPDDVVF LLSVEGKDDV PMRNGHHADV GSGEEIGLRR
     MRCAQVVQVL DDKGRPLREQ ARDDGFGPRV RQRRLLVNID AKQYHADMEQ TAKGAPNVYE
     QINLIVRRKG RENNFLPILE SIKRLTLSDI PAPSWLQEVF LGYGDPASAT YKRLPNRLNK
     IDFRDTFLDW EHLVQSFPGK SVEPNEEAHA PVEPPYLLEF PVAAEPEVAP PRASKKRRRD
     QAELAQPVQE SVRVSSYKPP NMGPYPADAP KLNKVRFTPA QVDAITSGTQ PGLTVVLGPP
     GTGKTDVATQ IISNIYHNFP DQRTLLVAHS NQALNQLFQK IVALDIDERH LLRLGHGEED
     LETDASYSKH GRVESFLERG QYYLSEVDRL AKNFGAPGAH GSSCETADYF NLVYVKPAWT
     QYWDSVTSGE TSVEQIITEF PFKDYFSNAP QPLFPPAVDR QQILDIAQGC YRHVQKIFAE
     LEDIRPFELL RNPRDKANYL LVKEARIIAM TSTHAAMRRQ EIASLGFHYD NVIMEEAAQI
     TEIENFIPLA LQNPQNGELP LQRIVLCGDH LQNSPVIQNL AFRQYANLEQ SLFQRLVRLG
     VPTIMLDQQG RARASIAELY KWRYPSLSNL PSVISNPEFQ IANPGFKHEY QFIDVQDYKG
     KGEEQPTPHW MINLGEAEYA VALYMYMRLL GYPANKISIL TTYAGQKSLI NDVLGHKCKN
     NPLFGRPRIV ATVDKYQGEQ NDYIILSLVR TRSIGYLRSI RRLTVALSRA RLGLYILGRR
     SVFESVFELK PAFDILLQRS DKLELVTDEM FGETQRTIDS AATTIPGEAQ MQDVEHLGKY
     VYEMTKAKVE AIKANGGVMP STAPEVQMGE AGVNGASHPV DDEEDDDRPE NVLIPTEAAE
     DFEGEDEEE
//
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