ID W6YX04_COCMI Unreviewed; 1449 AA.
AC W6YX04;
DT 16-APR-2014, integrated into UniProtKB/TrEMBL.
DT 16-APR-2014, sequence version 1.
DT 24-JAN-2024, entry version 38.
DE RecName: Full=Pre-mRNA-splicing factor {ECO:0000256|PIRNR:PIRNR038901};
GN ORFNames=COCMIDRAFT_99541 {ECO:0000313|EMBL:EUC43922.1};
OS Bipolaris oryzae ATCC 44560.
OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes;
OC Pleosporomycetidae; Pleosporales; Pleosporineae; Pleosporaceae; Bipolaris.
OX NCBI_TaxID=930090 {ECO:0000313|EMBL:EUC43922.1};
RN [1] {ECO:0000313|EMBL:EUC43922.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 44560 {ECO:0000313|EMBL:EUC43922.1};
RX PubMed=23357949; DOI=10.1371/journal.pgen.1003233;
RA Condon B.J., Leng Y., Wu D., Bushley K.E., Ohm R.A., Otillar R., Martin J.,
RA Schackwitz W., Grimwood J., MohdZainudin N., Xue C., Wang R., Manning V.A.,
RA Dhillon B., Tu Z.J., Steffenson B.J., Salamov A., Sun H., Lowry S.,
RA LaButti K., Han J., Copeland A., Lindquist E., Barry K., Schmutz J.,
RA Baker S.E., Ciuffetti L.M., Grigoriev I.V., Zhong S., Turgeon B.G.;
RT "Comparative genome structure, secondary metabolite, and effector coding
RT capacity across Cochliobolus pathogens.";
RL PLoS Genet. 9:E1003233-E1003233(2013).
CC -!- FUNCTION: Involved in mRNA splicing where it associates with cdc5 and
CC the other cwf proteins as part of the spliceosome.
CC {ECO:0000256|PIRNR:PIRNR038901}.
CC -!- SUBUNIT: Belongs to the 40S cdc5-associated complex (or cwf complex), a
CC spliceosome sub-complex reminiscent of a late-stage spliceosome.
CC {ECO:0000256|PIRNR:PIRNR038901}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PIRNR:PIRNR038901}.
CC -!- SIMILARITY: Belongs to the CWF11 family.
CC {ECO:0000256|PIRNR:PIRNR038901}.
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DR EMBL; KI964016; EUC43922.1; -; Genomic_DNA.
DR RefSeq; XP_007689576.1; XM_007691386.1.
DR STRING; 930090.W6YX04; -.
DR GeneID; 19129489; -.
DR KEGG; bor:COCMIDRAFT_99541; -.
DR eggNOG; KOG1806; Eukaryota.
DR HOGENOM; CLU_001195_0_0_1; -.
DR OrthoDB; 7041at2759; -.
DR GO; GO:0005684; C:U2-type spliceosomal complex; IEA:UniProtKB-UniRule.
DR GO; GO:0004386; F:helicase activity; IEA:InterPro.
DR GO; GO:0045292; P:mRNA cis splicing, via spliceosome; IEA:UniProtKB-UniRule.
DR CDD; cd17935; EEXXQc_AQR; 1.
DR CDD; cd18808; SF1_C_Upf1; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR048966; Aquarius_b-barrel.
DR InterPro; IPR048967; Aquarius_insert.
DR InterPro; IPR032174; Aquarius_N.
DR InterPro; IPR026300; CWF11_fam.
DR InterPro; IPR045055; DNA2/NAM7-like.
DR InterPro; IPR041679; DNA2/NAM7-like_C.
DR InterPro; IPR041677; DNA2/NAM7_AAA_11.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR047187; SF1_C_Upf1.
DR PANTHER; PTHR10887; DNA2/NAM7 HELICASE FAMILY; 1.
DR PANTHER; PTHR10887:SF5; RNA HELICASE AQUARIUS; 1.
DR Pfam; PF13086; AAA_11; 1.
DR Pfam; PF13087; AAA_12; 1.
DR Pfam; PF16399; Aquarius_N_1st; 1.
DR Pfam; PF21143; Aquarius_N_2nd; 1.
DR Pfam; PF21144; Aquarius_N_3rd; 1.
DR PIRSF; PIRSF038901; AQR_cwf11; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
PE 3: Inferred from homology;
KW mRNA processing {ECO:0000256|PIRNR:PIRNR038901};
KW mRNA splicing {ECO:0000256|PIRNR:PIRNR038901};
KW Nucleus {ECO:0000256|PIRNR:PIRNR038901}.
FT DOMAIN 35..422
FT /note="RNA helicase aquarius N-terminal"
FT /evidence="ECO:0000259|Pfam:PF16399"
FT DOMAIN 504..668
FT /note="RNA helicase aquarius beta-barrel"
FT /evidence="ECO:0000259|Pfam:PF21143"
FT DOMAIN 716..809
FT /note="RNA helicase aquarius insertion"
FT /evidence="ECO:0000259|Pfam:PF21144"
FT DOMAIN 821..1117
FT /note="DNA2/NAM7 helicase helicase"
FT /evidence="ECO:0000259|Pfam:PF13086"
FT DOMAIN 1128..1320
FT /note="DNA2/NAM7 helicase-like C-terminal"
FT /evidence="ECO:0000259|Pfam:PF13087"
FT REGION 767..811
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1403..1449
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 770..784
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1449 AA; 165237 MW; 700B69386441348E CRC64;
MSSTTSPGAS AAHAPDLANL HARPTVADLH GENHFAQVAR KNWLAAKKTP KVRPEVVKKE
LWDQLESADF AYSSLLILEN LQLLERYLWP GFTEDASNYH HLLLALMVNV KRRENLSSWE
HFSTKPAEFS SFFRRILSMT VDPSQPSKIR TQLISFVIGA FQSLDSGLVR KECAPLVGIS
IWQNLHSDAV REQHFEQHSM LRKAWRAASK RFDAGDDALQ ARLRFERSWL YTLLLDFIDR
LYNSSNSQDM RDNMAYCERF MELLIDLQSQ LPTRRYVNTL LKDLNMLSAI RLSPMYADED
NGLFRDLFDL LSHFTNFSIE DQTGRQLSKL EYDQQHYDLL SKLQRTGYAA FQEKLQLMAL
ANYKSIGNRE ELDGHLRTLS DEELVELCSL MGLRTEYPAT TYLVRDRAFY METLIMLVEQ
RPTFKDAVRD MPVLPTEKIL YETTFLRNES YDGSRPLAIP KLNLQYLTMG DFLWRSFILY
RAESFYGIRK DMEDVVKRVK PKGRGVNTKF TGVSKMSLPI MKPAIVDVAP SRVGEEHPAY
VRAEIILDVS RLQYPVRRDW EQLRPDDVVF LLSVEGKDDV PMRNGHHADV GSGEEIGLRR
MRCAQVVQVL DDKGRPLREQ ARDDGFGPRV RQRRLLVNID AKQYHADMEQ TAKGAPNVYE
QINLIVRRKG RENNFLPILE SIKRLTLSDI PAPSWLQEVF LGYGDPASAT YKRLPNRLNK
IDFRDTFLDW EHLVQSFPGK SVEPNEEAHA PVEPPYLLEF PVAAEPEVAP PRASKKRRRD
QAELAQPVQE SVRVSSYKPP NMGPYPADAP KLNKVRFTPA QVDAITSGTQ PGLTVVLGPP
GTGKTDVATQ IISNIYHNFP DQRTLLVAHS NQALNQLFQK IVALDIDERH LLRLGHGEED
LETDASYSKH GRVESFLERG QYYLSEVDRL AKNFGAPGAH GSSCETADYF NLVYVKPAWT
QYWDSVTSGE TSVEQIITEF PFKDYFSNAP QPLFPPAVDR QQILDIAQGC YRHVQKIFAE
LEDIRPFELL RNPRDKANYL LVKEARIIAM TSTHAAMRRQ EIASLGFHYD NVIMEEAAQI
TEIENFIPLA LQNPQNGELP LQRIVLCGDH LQNSPVIQNL AFRQYANLEQ SLFQRLVRLG
VPTIMLDQQG RARASIAELY KWRYPSLSNL PSVISNPEFQ IANPGFKHEY QFIDVQDYKG
KGEEQPTPHW MINLGEAEYA VALYMYMRLL GYPANKISIL TTYAGQKSLI NDVLGHKCKN
NPLFGRPRIV ATVDKYQGEQ NDYIILSLVR TRSIGYLRSI RRLTVALSRA RLGLYILGRR
SVFESVFELK PAFDILLQRS DKLELVTDEM FGETQRTIDS AATTIPGEAQ MQDVEHLGKY
VYEMTKAKVE AIKANGGVMP STAPEVQMGE AGVNGASHPV DDEEDDDRPE NVLIPTEAAE
DFEGEDEEE
//