ID W7TI10_9STRA Unreviewed; 1504 AA.
AC W7TI10;
DT 16-APR-2014, integrated into UniProtKB/TrEMBL.
DT 16-APR-2014, sequence version 1.
DT 27-MAR-2024, entry version 32.
DE RecName: Full=RNA helicase {ECO:0000256|ARBA:ARBA00012552};
DE EC=3.6.4.13 {ECO:0000256|ARBA:ARBA00012552};
GN ORFNames=Naga_100001g100 {ECO:0000313|EMBL:EWM26630.1};
OS Nannochloropsis gaditana.
OC Eukaryota; Sar; Stramenopiles; Ochrophyta; Eustigmatophyceae;
OC Eustigmatales; Monodopsidaceae; Nannochloropsis.
OX NCBI_TaxID=72520 {ECO:0000313|EMBL:EWM26630.1, ECO:0000313|Proteomes:UP000019335};
RN [1] {ECO:0000313|EMBL:EWM26630.1, ECO:0000313|Proteomes:UP000019335}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=B-31 {ECO:0000313|EMBL:EWM26630.1,
RC ECO:0000313|Proteomes:UP000019335};
RX PubMed=23966634; DOI=10.1093/mp/sst120;
RA Corteggiani Carpinelli E., Telatin A., Vitulo N., Forcato C., D'Angelo M.,
RA Schiavon R., Vezzi A., Giacometti G.M., Morosinotto T., Valle G.;
RT "Chromosome Scale Genome Assembly and Transcriptome Profiling of
RT Nannochloropsis gaditana in Nitrogen Depletion.";
RL Mol. Plant 7:323-335(2014).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC Evidence={ECO:0000256|ARBA:ARBA00001556};
CC -!- SIMILARITY: Belongs to the DEAD box helicase family. DEAH subfamily.
CC PRP16 sub-subfamily. {ECO:0000256|ARBA:ARBA00038040}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EWM26630.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AZIL01000609; EWM26630.1; -; Genomic_DNA.
DR EnsemblProtists; EWM26630; EWM26630; Naga_100001g100.
DR OrthoDB; 5488182at2759; -.
DR Proteomes; UP000019335; Chromosome 8.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR CDD; cd18791; SF2_C_RHA; 1.
DR Gene3D; 1.20.120.1080; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR011709; DEAD-box_helicase_OB_fold.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR002464; DNA/RNA_helicase_DEAH_CS.
DR InterPro; IPR048333; HA2_WH.
DR InterPro; IPR007502; Helicase-assoc_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR PANTHER; PTHR18934; ATP-DEPENDENT RNA HELICASE; 1.
DR PANTHER; PTHR18934:SF91; PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE PRP16; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF21010; HA2_C; 1.
DR Pfam; PF04408; HA2_N; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF07717; OB_NTP_bind; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00847; HA2; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00690; DEAH_ATP_HELICASE; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Helicase {ECO:0000313|EMBL:EWM26630.1};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000019335}.
FT DOMAIN 824..987
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 1001..1186
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 170..585
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 597..643
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 752..780
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1467..1504
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 215..287
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 297..313
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 320..390
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 398..435
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 503..523
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 538..552
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 606..633
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1467..1483
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1504 AA; 168851 MW; B406D60D9118CC99 CRC64;
MRSRVLSLSG AHECRETQAV KCSVRPHLLP LLLLQLERFT GSAWRHLPKL GRVRPVMTDI
DAGRVKAAQE ATLRDEALVM RVASEVAQAL KLPGKNVTLG RKLVRLGLTH ADSVDGFCAE
ALQLAPISSS LLQEVHHTLR QRYRQAYATA GEQAGETAAK QITGVGRTMD GFVMSPSKHL
PGGSQQASKE EKPVFFKPQT KDNASPVERK SMLGLDRLAA MKRAEKETTK DTWSGGKPVV
KKEEREGEEG GKGGPRPEDA ARRKSDFHRS STKAADRSYR PRREPDTPSH PGGVNVEARR
GLEERERGRG RGGGVAVGER GRGRVEDRDG RSNGDRKRDG KGVYLSGRGE EERSRRRGRD
REEEERQRRR SEGRPRENGR RDREGRGSRS RSRSPGYTWK RHRGERRERG SSRSEREAQE
GSEGGRSRRR EAEGGGGPSG RWGEYGPPTP SRSGLGLDED EWEAPENLQS VRRPSLTPGA
TPLASPRATP RASLYGRPSD DPGEAAWEVE ERREGRRGDR GTGSESIRPA VPETPFDWRA
AMREDGREAA YVADGRKPGG PDARPGSSLR QRQRGRKEED EEDEEYYEAF YLAEEGVSRG
EDLFGGDPAT LREKEEAMRK LQERNEANKR RQQQNTRKNQ LAADQNAWEE NRLLTSGVAV
RNEVDTDLAD EEETRVRLNV HHTKPPFIDG RVTFSRQLTT VSVVKEPTSD MAILSKKGSA
LVRERRERRE RGKMRQRFWE LGGSRMGQAM GLKEEGEEAK EGGAGASGEG PGKEEEEYDY
RKESKFSEHL KDMKKEGQSD FSRSKSMAEQ RQYLPISTVR DELLTVIREN PIVIIVGETG
SGKTTQMTQY LHEEGFTDLG MVACTQPRRV AATTVAMRVA DEMGVELGEE VGYSIRFDDC
TSDKTLIKYM TDGILLRESL REPDLDSYAA IVMDEAHERS LNTDVLFGML RKVAQRRRDL
KLIVTSATLD SKRFSDFFGG VPVFEIPGRT FPVERVYAKT SVEDYVDAAV KQALAIHLSH
PPGDILVFMT GQEDIETVCE VIAERMMDLG TDRVPPLLLL PLFSNLSSDQ QSKAFEATEK
AVRKCVVSTN IAETSVTVDG VKYVIDCGFS KLKVYNPSIG MDSLLVTPVA QANSDQRAGR
AGRTGPGHCY RLYTERQYRD ELLKTQVPEI QRTNLANVVL LLKSLGVTDL KEFDFMDPPP
QENLQNSMYQ LWILGALDNT GQLTTLGRKM AEFPIDPPLA KMLIVSHDLR CSEEVLIVVS
MLSAPPVFFR PKDRAEESDA KREKFFVPES DHLTHLNVYL QWKKNRYSAP WCTEHFLHAK
SLKKAREIHG QLSDIMQSQR MPLHAAGNSN WDRVRKAICS AYFYNSALMK GLGDYRNLLT
GIPCHVHPTS ALAGLGYTPD YVTYHELVMT SKSFMQCITA IEPEWLAELG PAFFSLHESS
TNRMARRREE KELKDSMEAE MQAALKREEE EKAARKAAQV KETPKHVGSR MQTPGRWTPR
RVGL
//