ID W9RDC1_9ROSA Unreviewed; 574 AA.
AC W9RDC1;
DT 14-MAY-2014, integrated into UniProtKB/TrEMBL.
DT 14-MAY-2014, sequence version 1.
DT 24-JAN-2024, entry version 36.
DE RecName: Full=RNA polymerase sigma factor {ECO:0000256|PIRNR:PIRNR000767};
GN ORFNames=L484_023810 {ECO:0000313|EMBL:EXB70625.1};
OS Morus notabilis.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Rosales; Moraceae; Moreae; Morus.
OX NCBI_TaxID=981085 {ECO:0000313|EMBL:EXB70625.1, ECO:0000313|Proteomes:UP000030645};
RN [1] {ECO:0000313|Proteomes:UP000030645}
RP NUCLEOTIDE SEQUENCE.
RA He N., Zhao S.;
RT "Draft Genome Sequence of a Mulberry Tree, Morus notabilis C.K. Schneid.";
RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Sigma factors are initiation factors that promote the
CC attachment of plastid-encoded RNA polymerase (PEP) to specific
CC initiation sites and are then released.
CC {ECO:0000256|PIRNR:PIRNR000767}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast
CC {ECO:0000256|PIRNR:PIRNR000767}.
CC -!- SIMILARITY: Belongs to the sigma-70 factor family.
CC {ECO:0000256|ARBA:ARBA00007788, ECO:0000256|PIRNR:PIRNR000767}.
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DR EMBL; KE344611; EXB70625.1; -; Genomic_DNA.
DR RefSeq; XP_010097670.1; XM_010099368.1.
DR AlphaFoldDB; W9RDC1; -.
DR STRING; 981085.W9RDC1; -.
DR GeneID; 21406564; -.
DR KEGG; mnt:21406564; -.
DR eggNOG; ENOG502QVXR; Eukaryota.
DR OrthoDB; 33789at2759; -.
DR Proteomes; UP000030645; Unassembled WGS sequence.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-UniRule.
DR GO; GO:0071482; P:cellular response to light stimulus; IEA:UniProt.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:UniProtKB-UniRule.
DR CDD; cd06171; Sigma70_r4; 1.
DR Gene3D; 1.10.601.10; RNA Polymerase Primary Sigma Factor; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 2.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR000943; RNA_pol_sigma70.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR007624; RNA_pol_sigma70_r3.
DR InterPro; IPR007630; RNA_pol_sigma70_r4.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR016262; RNA_pol_sigma_SigB/C/D/F.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR30603; RNA POLYMERASE SIGMA FACTOR RPO; 1.
DR PANTHER; PTHR30603:SF57; RNA POLYMERASE SIGMA FACTOR SIGB; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF04539; Sigma70_r3; 1.
DR Pfam; PF04545; Sigma70_r4; 1.
DR PIRSF; PIRSF000767; RNA_pol_sigma_SigB/C/D; 1.
DR PRINTS; PR00046; SIGMA70FCT.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 2.
DR PROSITE; PS00716; SIGMA70_2; 1.
PE 3: Inferred from homology;
KW Chloroplast {ECO:0000256|PIRNR:PIRNR000767};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|PIRNR:PIRNR000767};
KW Plastid {ECO:0000256|PIRNR:PIRNR000767};
KW Reference proteome {ECO:0000313|Proteomes:UP000030645};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082,
KW ECO:0000256|PIRNR:PIRNR000767};
KW Transcription {ECO:0000256|ARBA:ARBA00023163,
KW ECO:0000256|PIRNR:PIRNR000767};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015,
KW ECO:0000256|PIRNR:PIRNR000767}.
FT DOMAIN 532..558
FT /note="RNA polymerase sigma-70"
FT /evidence="ECO:0000259|PROSITE:PS00716"
FT REGION 214..256
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 216..233
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 574 AA; 63963 MW; 1C77EB67595D20B6 CRC64;
MSCLLPQFNC KPDTFSAQFN FRTHSLPTPN SHLPKARDIN SLAQCVLSTT SPSTSVGATY
VLSVEKLRFP SLDANSESVT SNRPWTYTGA TGPPVEANFE ATLATETLLT SEEAVIAAAA
AEAVTLAKAA VKVAKDAALL VRPSTRAESI SLVSSEARNI KTAQAASRVR DSLRAEMALI
EDHPPKDAAK ESNDLQPTNE ELRILQEQLS KSIAVRSRRQ SERKAKRDRA AEKAAANVVA
VKSGSNSRKK RASVQDVDHS DPLRYLRSTT STSRLLTATE EIELSEGIQD LLKLEKLQEE
LAERCGGPPT FAQWAAAAGV DQKTLRRRIN YGILCKDKMI KSNVRLVISI AKNYQGAGMN
LQDLVQEGCR GLVRGAEKFD ASKGFKFSTY AHWWIKQAVR KSLSDQSRTI RLPFHMVEAT
YRVKEARKQL YSENGRQPND EEVAEATGLS MKRLAAVLLT PKAPRSLEQK IGINQNLKPS
EIIADPDAET LEDVLTRQFM KQDLDKVLDS LNQREKQVIR WRFGMDDGRM KTLQEIGELM
GVSRERIRQI ESCAFRKLKN KKRTKHLQQY LISQ
//
