ID WRK39_ARATH Reviewed; 330 AA.
AC Q9SR07;
DT 15-MAY-2002, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 24-JAN-2024, entry version 145.
DE RecName: Full=Probable WRKY transcription factor 39;
DE AltName: Full=WRKY DNA-binding protein 39;
GN Name=WRKY39; OrderedLocusNames=At3g04670; ORFNames=F7O18.30;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Columbia; TISSUE=Flower;
RA Ulker B., Kushnir S., Somssich I.E.;
RT "Arabidopsis thaliana transcription factor WRKY39.";
RL Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
CC -!- FUNCTION: Transcription factor. Interacts specifically with the W box
CC (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-
CC acting element (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00223}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences.;
CC Name=1;
CC IsoId=Q9SR07-1; Sequence=Displayed;
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DR EMBL; AF404860; AAK96198.1; -; mRNA.
DR EMBL; AC011437; AAF04913.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE74116.1; -; Genomic_DNA.
DR EMBL; AY053420; AAK96650.1; -; mRNA.
DR EMBL; AY133586; AAM91416.1; -; mRNA.
DR RefSeq; NP_566236.1; NM_111339.3. [Q9SR07-1]
DR AlphaFoldDB; Q9SR07; -.
DR SMR; Q9SR07; -.
DR BioGRID; 4960; 5.
DR IntAct; Q9SR07; 3.
DR MINT; Q9SR07; -.
DR STRING; 3702.Q9SR07; -.
DR iPTMnet; Q9SR07; -.
DR PaxDb; 3702-AT3G04670-1; -.
DR ProteomicsDB; 246477; -. [Q9SR07-1]
DR EnsemblPlants; AT3G04670.1; AT3G04670.1; AT3G04670. [Q9SR07-1]
DR GeneID; 819625; -.
DR Gramene; AT3G04670.1; AT3G04670.1; AT3G04670. [Q9SR07-1]
DR KEGG; ath:AT3G04670; -.
DR Araport; AT3G04670; -.
DR TAIR; AT3G04670; WRKY39.
DR eggNOG; ENOG502QPQX; Eukaryota.
DR HOGENOM; CLU_040478_0_0_1; -.
DR InParanoid; Q9SR07; -.
DR OrthoDB; 5478560at2759; -.
DR PhylomeDB; Q9SR07; -.
DR PRO; PR:Q9SR07; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9SR07; baseline and differential.
DR Genevisible; Q9SR07; AT.
DR GO; GO:0005634; C:nucleus; IC:TAIR.
DR GO; GO:0005516; F:calmodulin binding; IDA:TAIR.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR Gene3D; 2.20.25.80; WRKY domain; 1.
DR InterPro; IPR003657; WRKY_dom.
DR InterPro; IPR036576; WRKY_dom_sf.
DR InterPro; IPR044810; WRKY_plant.
DR InterPro; IPR018872; Zn-cluster-dom.
DR PANTHER; PTHR31282; WRKY TRANSCRIPTION FACTOR 21-RELATED; 1.
DR PANTHER; PTHR31282:SF189; WRKY TRANSCRIPTION FACTOR 39-RELATED; 1.
DR Pfam; PF10533; Plant_zn_clust; 1.
DR Pfam; PF03106; WRKY; 1.
DR SMART; SM00774; WRKY; 1.
DR SUPFAM; SSF118290; WRKY DNA-binding domain; 1.
DR PROSITE; PS50811; WRKY; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..330
FT /note="Probable WRKY transcription factor 39"
FT /id="PRO_0000133680"
FT DNA_BIND 256..322
FT /note="WRKY"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00223"
SQ SEQUENCE 330 AA; 36719 MW; 8AFB80E448F2B42C CRC64;
MEEVEAANRS AIESCHGVLN LLSQRTSDPK SLTVETGEVV SKFKRVASLL TRGLGHGKFR
STNKFRSSFP QHIFLESPIC CGNDLSGDYT QVLAPEPLQM VPASAVYNEM EPKHQLGHPS
LMLSHKMCVD KSFLELKPPP FRAPYQLIHN HQQIAYSRSN SGVNLKFDGS GSSCYTPSVS
NGSRSFVSSL SMDASVTDYD RNSFHLTGLS RGSDQQHTRK MCSGSLKCGS RSKCHCSKKR
KLRVKRSIKV PAISNKIADI PPDEYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE
RCIDETSMLI VTYEGEHNHS RILSSQSAHT
//
