ID X6L1W1_9RHOB Unreviewed; 215 AA.
AC X6L1W1;
DT 11-JUN-2014, integrated into UniProtKB/TrEMBL.
DT 04-MAR-2015, sequence version 2.
DT 27-MAR-2024, entry version 46.
DE RecName: Full=Large ribosomal subunit protein bL25 {ECO:0000256|HAMAP-Rule:MF_01334};
DE AltName: Full=General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334};
GN Name=rplY {ECO:0000256|HAMAP-Rule:MF_01334};
GN Synonyms=ctc {ECO:0000256|HAMAP-Rule:MF_01334};
GN ORFNames=P279_10460 {ECO:0000313|EMBL:ETA52108.2};
OS Rhodobacteraceae bacterium PD-2.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales;
OC Paracoccaceae.
OX NCBI_TaxID=1169855 {ECO:0000313|EMBL:ETA52108.2, ECO:0000313|Proteomes:UP000023196};
RN [1] {ECO:0000313|EMBL:ETA52108.2, ECO:0000313|Proteomes:UP000023196}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=PD-2 {ECO:0000313|EMBL:ETA52108.2,
RC ECO:0000313|Proteomes:UP000023196};
RX PubMed=25700405;
RA Zheng L., Cui Z., Xu L., Sun C., Powell R.J., Hill R.T.;
RT "Draft Genome Sequence of Rhodobacteraceae Strain PD-2, an Algicidal
RT Bacterium with a Quorum-Sensing System, Isolated from the Marine Microalga
RT Prorocentrum donghaiense.";
RL Genome Announc. Announc.3:e01549-14(2015).
CC -!- FUNCTION: This is one of the proteins that binds to the 5S RNA in the
CC ribosome where it forms part of the central protuberance.
CC {ECO:0000256|HAMAP-Rule:MF_01334}.
CC -!- SUBUNIT: Part of the 50S ribosomal subunit; part of the 5S
CC rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA
CC independently of L5 and L18. {ECO:0000256|HAMAP-Rule:MF_01334}.
CC -!- SIMILARITY: Belongs to the bacterial ribosomal protein bL25 family. CTC
CC subfamily. {ECO:0000256|HAMAP-Rule:MF_01334}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:ETA52108.2}.
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DR EMBL; AWRV02000007; ETA52108.2; -; Genomic_DNA.
DR AlphaFoldDB; X6L1W1; -.
DR HOGENOM; CLU_075939_0_0_5; -.
DR OrthoDB; 9806411at2; -.
DR Proteomes; UP000023196; Unassembled WGS sequence.
DR GO; GO:1990904; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0008097; F:5S rRNA binding; IEA:InterPro.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0006412; P:translation; IEA:UniProtKB-UniRule.
DR CDD; cd00495; Ribosomal_L25_TL5_CTC; 1.
DR Gene3D; 2.170.120.20; Ribosomal protein L25, beta domain; 1.
DR HAMAP; MF_01334; Ribosomal_L25_CTC; 1.
DR InterPro; IPR020056; Rbsml_bL25/Gln-tRNA_synth_N.
DR InterPro; IPR011035; Ribosomal_bL25/Gln-tRNA_synth.
DR InterPro; IPR020057; Ribosomal_bL25_b-dom.
DR InterPro; IPR037121; Ribosomal_bL25_C.
DR InterPro; IPR001021; Ribosomal_bL25_long.
DR InterPro; IPR029751; Ribosomal_L25_dom.
DR NCBIfam; TIGR00731; bL25_bact_ctc; 1.
DR PANTHER; PTHR33284; RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR33284:SF1; RIBOSOMAL PROTEIN L25_GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF01386; Ribosomal_L25p; 1.
DR Pfam; PF14693; Ribosomal_TL5_C; 1.
DR SUPFAM; SSF50715; Ribosomal protein L25-like; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000023196};
KW Ribonucleoprotein {ECO:0000256|ARBA:ARBA00023274, ECO:0000256|HAMAP-
KW Rule:MF_01334};
KW Ribosomal protein {ECO:0000256|ARBA:ARBA00022980, ECO:0000256|HAMAP-
KW Rule:MF_01334};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|HAMAP-
KW Rule:MF_01334};
KW rRNA-binding {ECO:0000256|ARBA:ARBA00022730, ECO:0000256|HAMAP-
KW Rule:MF_01334}.
FT DOMAIN 8..96
FT /note="Large ribosomal subunit protein bL25 L25"
FT /evidence="ECO:0000259|Pfam:PF01386"
FT DOMAIN 104..188
FT /note="Large ribosomal subunit protein bL25 beta"
FT /evidence="ECO:0000259|Pfam:PF14693"
FT REGION 190..215
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 215 AA; 23280 MW; 964C7DB937128823 CRC64;
MAGEIPDLVA EERAGTGKGA ARAARRNGMV PGIVFGGEKD PLAIQLPFNV LLKKLKDGRF
KSTLWNLKVE GHEDVRVICR DVQRDVVKDL PTHLDLMRLR RTSKVALFIP VEFINEETAP
GIKKGGVLTV VRPEVELVVT AGDIPEKITV DLGSLNIGDI VHINDVTLPE GTKATIDRNF
VIANISAPSG LAASADDEEE ATETEVINQK DETAE
//