ID Y1049_ARATH Reviewed; 488 AA.
AC Q9MAU5; Q8LAL8;
DT 22-FEB-2012, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 27-MAR-2024, entry version 130.
DE RecName: Full=Putative BPI/LBP family protein At1g04970;
DE Flags: Precursor;
GN OrderedLocusNames=At1g04970; ORFNames=F13M7.4;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences.;
CC Name=1;
CC IsoId=Q9MAU5-1; Sequence=Displayed;
CC -!- SIMILARITY: Belongs to the BPI/LBP/Plunc superfamily. BPI/LBP (TC
CC 1.C.40) family. {ECO:0000305}.
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DR EMBL; AC004809; AAF40464.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE27771.1; -; Genomic_DNA.
DR EMBL; BT004276; AAO42277.1; -; mRNA.
DR EMBL; BT005587; AAO64007.1; -; mRNA.
DR EMBL; AY087735; AAM65272.1; -; mRNA.
DR PIR; C86183; C86183.
DR RefSeq; NP_563724.1; NM_100375.4. [Q9MAU5-1]
DR AlphaFoldDB; Q9MAU5; -.
DR SMR; Q9MAU5; -.
DR BioGRID; 24592; 2.
DR IntAct; Q9MAU5; 2.
DR STRING; 3702.Q9MAU5; -.
DR PaxDb; 3702-AT1G04970-1; -.
DR ProteomicsDB; 243175; -. [Q9MAU5-1]
DR DNASU; 839357; -.
DR EnsemblPlants; AT1G04970.1; AT1G04970.1; AT1G04970. [Q9MAU5-1]
DR GeneID; 839357; -.
DR Gramene; AT1G04970.1; AT1G04970.1; AT1G04970. [Q9MAU5-1]
DR KEGG; ath:AT1G04970; -.
DR Araport; AT1G04970; -.
DR TAIR; AT1G04970; LBR-1.
DR eggNOG; KOG4160; Eukaryota.
DR HOGENOM; CLU_028970_0_0_1; -.
DR InParanoid; Q9MAU5; -.
DR OMA; DPYMEID; -.
DR OrthoDB; 462248at2759; -.
DR PhylomeDB; Q9MAU5; -.
DR PRO; PR:Q9MAU5; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9MAU5; baseline and differential.
DR Genevisible; Q9MAU5; AT.
DR GO; GO:0005615; C:extracellular space; IEA:InterPro.
DR GO; GO:0000325; C:plant-type vacuole; HDA:TAIR.
DR GO; GO:0001530; F:lipopolysaccharide binding; IDA:TAIR.
DR GO; GO:1903409; P:reactive oxygen species biosynthetic process; IMP:TAIR.
DR GO; GO:0010468; P:regulation of gene expression; IMP:TAIR.
DR CDD; cd00025; BPI1; 1.
DR CDD; cd00026; BPI2; 1.
DR InterPro; IPR017943; Bactericidal_perm-incr_a/b_dom.
DR InterPro; IPR030675; BPI/LBP.
DR InterPro; IPR045897; BPI/LBP_pln.
DR InterPro; IPR001124; Lipid-bd_serum_glycop_C.
DR InterPro; IPR017942; Lipid-bd_serum_glycop_N.
DR PANTHER; PTHR46801:SF6; BPI2 DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR46801; OS06G0309200 PROTEIN; 1.
DR Pfam; PF01273; LBP_BPI_CETP; 1.
DR Pfam; PF02886; LBP_BPI_CETP_C; 1.
DR PIRSF; PIRSF002417; Lipid_binding_protein; 1.
DR SMART; SM00328; BPI1; 1.
DR SMART; SM00329; BPI2; 1.
DR SUPFAM; SSF55394; Bactericidal permeability-increasing protein, BPI; 2.
PE 2: Evidence at transcript level;
KW Alternative splicing; Glycoprotein; Reference proteome; Signal.
FT SIGNAL 1..24
FT /evidence="ECO:0000255"
FT CHAIN 25..488
FT /note="Putative BPI/LBP family protein At1g04970"
FT /id="PRO_0000415535"
FT CARBOHYD 79
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 109
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 231
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 242
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CARBOHYD 341
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
FT CONFLICT 217
FT /note="S -> N (in Ref. 4; AAM65272)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 488 AA; 53493 MW; 885BAD5DAF0A80C9 CRC64;
MDVGRCFLFL LLPSFFFLPS QTQSTDSFTS VLVSQNGLDF VKNLLVNKAI ASIIPLQIPR
IEKSMKIPFL GGIDVVVSNL TIYELDVASS YVKLGETGVV IVASGTTCNL SMNWHYSYST
WLPPIEISDQ GIASVQVQGM EIGLSLGLKS DEGGLKLSLS ECGCHVEDIT IELEGGASWF
YQGMVNAFKD QIGSSVESTI AKKLTEGVSD LDSFLQSLPK EIPVDDNADL NVTFTSDPIL
RNSSITFEID GLFTKGETNQ VLKSFFKKSV SLVICPGNSK MLGISVDEAV FNSAAALYYN
ADFVQWVVDK IPEQSLLNTA RWRFIIPQLY KKYPNQDMNL NISLSSPPLV KISEQYVGAN
VNADLVINVL DANQVIPVAC ISLMIRGSGA LRVMGNNLGG SVSLEDFSMS LKWSNIGNLH
LHLLQPIVWT VIQTVFVPYA NDHLEKGFPL PIMHGFTLQN AEIICSESEI TVCSDVAYLD
SSQQPQWL
//
