ID Y4BL_SINFN Reviewed; 516 AA.
AC P55379;
DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1997, sequence version 1.
DT 27-MAR-2024, entry version 131.
DE RecName: Full=Putative transposase y4bL/y4kJ/y4tB;
GN OrderedLocusNames=NGR_a00180; ORFNames=y4bL;
GN and
GN OrderedLocusNames=NGR_a02860; ORFNames=y4kJ;
GN and
GN OrderedLocusNames=NGR_a01560; ORFNames=y4tB;
OS Sinorhizobium fredii (strain NBRC 101917 / NGR234).
OG Plasmid sym pNGR234a.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
OC Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
OX NCBI_TaxID=394;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=NBRC 101917 / NGR234;
RX PubMed=9163424; DOI=10.1038/387394a0;
RA Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A.,
RA Perret X.;
RT "Molecular basis of symbiosis between Rhizobium and legumes.";
RL Nature 387:394-401(1997).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=NBRC 101917 / NGR234;
RX PubMed=19376903; DOI=10.1128/aem.00515-09;
RA Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A.,
RA Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A.,
RA Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A.,
RA Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.;
RT "Rhizobium sp. strain NGR234 possesses a remarkable number of secretion
RT systems.";
RL Appl. Environ. Microbiol. 75:4035-4045(2009).
CC -!- SIMILARITY: Belongs to the transposase IS21/IS408/IS1162 family.
CC {ECO:0000305}.
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DR EMBL; U00090; AAB91627.1; -; Genomic_DNA.
DR EMBL; U00090; AAB91741.1; -; Genomic_DNA.
DR EMBL; U00090; AAB91856.1; -; Genomic_DNA.
DR RefSeq; NP_443789.1; NC_000914.2.
DR RefSeq; NP_443939.1; NC_000914.2.
DR RefSeq; NP_444069.1; NC_000914.2.
DR RefSeq; WP_010875060.1; NC_012587.1.
DR RefSeq; YP_002822318.1; NC_012586.1.
DR RefSeq; YP_002823144.1; NC_012586.1.
DR RefSeq; YP_002823695.1; NC_012586.1.
DR RefSeq; YP_002826747.1; NC_012587.1.
DR AlphaFoldDB; P55379; -.
DR SMR; P55379; -.
DR STRING; 394.NGR_c22340; -.
DR KEGG; rhi:NGR_a00180; -.
DR KEGG; rhi:NGR_a01560; -.
DR KEGG; rhi:NGR_a02860; -.
DR eggNOG; COG2390; Bacteria.
DR eggNOG; COG4584; Bacteria.
DR HOGENOM; CLU_020626_11_0_5; -.
DR OrthoDB; 2065409at2; -.
DR Proteomes; UP000001054; Plasmid sym pNGR234a.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR GO; GO:0032196; P:transposition; IEA:UniProtKB-KW.
DR CDD; cd00090; HTH_ARSR; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR011991; ArsR-like_HTH.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017895; HTH_IS408/IS1162_type.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR013249; RNA_pol_sigma70_r4_t2.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR NCBIfam; NF033546; transpos_IS21; 1.
DR PANTHER; PTHR35004:SF7; INTEGRASE PROTEIN-RELATED; 1.
DR PANTHER; PTHR35004; TRANSPOSASE RV3428C-RELATED; 1.
DR Pfam; PF08281; Sigma70_r4_2; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50532; HTH_IS408; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
PE 3: Inferred from homology;
KW DNA recombination; DNA-binding; Plasmid; Reference proteome;
KW Transposable element; Transposition.
FT CHAIN 1..516
FT /note="Putative transposase y4bL/y4kJ/y4tB"
FT /id="PRO_0000075472"
FT DOMAIN 15..96
FT /note="HTH IS408-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00616"
FT DOMAIN 138..319
FT /note="Integrase catalytic"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00457"
FT REGION 493..516
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 516 AA; 58267 MW; 0ADF071C6DEA4A27 CRC64;
MPRRKQARRT TVRDIRTILR LTHEEGLSVR EIAERLKIGK SSVSTYLLRS REAGLSWPLP
IGADEDAKLE RRLFGRAGRP PRDLSEPDWA LVVRELKRKG VTLTLLWQEY RASHPDGYGF
TWFCEQVAAF RQRTSVAFRN RHAAGAVMQT DYAGPTVPVI DPATGVIHPA QIFVAVLGAS
NLTFAHASFS QQLPDWIDGQ VRALTFYGGV TKAIVCDNLK SGVAKALWFE PTLTATFAAM
AEHYDTTILP TRSRKPRDKG RVEGAVLIVE RWILARLRNR TFFSLAALNT AIAELLEDLN
NRTMRHVGKS RRELFEEIER PALKPLPAIP FEYAEWKSAK VHPDYHVEVD KTFYSVPHRL
IGCTLQVRLT HRVVEIFHDH QRVASHVRRS QRSGHVTVND HMPKAHQRYA NTTPANLIGR
ATQIGPNAAI LVERMMRDRP HPEQGYRSAM GILSLAPRYG SQRLEAACER ALTINAITYS
SVASILKSGL DRERPQAEHA APTPAHTNIR GRSYYQ
//
