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Database: UniProt
Entry: YDJZ_ECOLI
LinkDB: YDJZ_ECOLI
Original site: YDJZ_ECOLI 
ID   YDJZ_ECOLI              Reviewed;         235 AA.
AC   P76221; Q2MB37;
DT   01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
DT   01-FEB-1997, sequence version 1.
DT   27-MAR-2024, entry version 137.
DE   RecName: Full=TVP38/TMEM64 family inner membrane protein YdjZ;
GN   Name=ydjZ; OrderedLocusNames=b1752, JW1741;
OS   Escherichia coli (strain K12).
OC   Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
OC   Enterobacteriaceae; Escherichia.
OX   NCBI_TaxID=83333;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=K12 / MG1655 / ATCC 47076;
RX   PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA   Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA   Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA   Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA   Shao Y.;
RT   "The complete genome sequence of Escherichia coli K-12.";
RL   Science 277:1453-1462(1997).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX   PubMed=16738553; DOI=10.1038/msb4100049;
RA   Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA   Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT   "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT   and W3110.";
RL   Mol. Syst. Biol. 2:E1-E5(2006).
RN   [3]
RP   TOPOLOGY [LARGE SCALE ANALYSIS].
RC   STRAIN=K12 / MG1655 / ATCC 47076;
RX   PubMed=15919996; DOI=10.1126/science.1109730;
RA   Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.;
RT   "Global topology analysis of the Escherichia coli inner membrane
RT   proteome.";
RL   Science 308:1321-1323(2005).
RN   [4]
RP   REGION VTT DOMAIN.
RX   PubMed=30093494; DOI=10.1083/jcb.201804132;
RA   Morita K., Hama Y., Izume T., Tamura N., Ueno T., Yamashita Y.,
RA   Sakamaki Y., Mimura K., Morishita H., Shihoya W., Nureki O., Mano H.,
RA   Mizushima N.;
RT   "Genome-wide CRISPR screen identifies TMEM41B as a gene required for
RT   autophagosome formation.";
RL   J. Cell Biol. 217:3817-3828(2018).
CC   -!- SUBCELLULAR LOCATION: Cell inner membrane; Multi-pass membrane protein.
CC   -!- DOMAIN: The VTT domain was previously called the SNARE-assoc domain. As
CC       there is no evidence that this domain associates with SNARE proteins,
CC       it was renamed as VMP1, TMEM41, and TVP38 (VTT) domain.
CC       {ECO:0000305|PubMed:30093494}.
CC   -!- SIMILARITY: Belongs to the TVP38/TMEM64 family. {ECO:0000305}.
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DR   EMBL; U00096; AAC74822.1; -; Genomic_DNA.
DR   EMBL; AP009048; BAE76519.1; -; Genomic_DNA.
DR   PIR; H64934; H64934.
DR   RefSeq; NP_416266.1; NC_000913.3.
DR   RefSeq; WP_000980098.1; NZ_SSZK01000001.1.
DR   AlphaFoldDB; P76221; -.
DR   BioGRID; 4259418; 9.
DR   STRING; 511145.b1752; -.
DR   TCDB; 9.B.27.1.2; the death effector domain a (deda) family.
DR   PaxDb; 511145-b1752; -.
DR   DNASU; 946269; -.
DR   EnsemblBacteria; AAC74822; AAC74822; b1752.
DR   GeneID; 946269; -.
DR   KEGG; ecj:JW1741; -.
DR   KEGG; eco:b1752; -.
DR   PATRIC; fig|1411691.4.peg.503; -.
DR   EchoBASE; EB3758; -.
DR   eggNOG; COG0398; Bacteria.
DR   HOGENOM; CLU_038944_8_0_6; -.
DR   InParanoid; P76221; -.
DR   OMA; WVERHGF; -.
DR   OrthoDB; 9812980at2; -.
DR   PhylomeDB; P76221; -.
DR   BioCyc; EcoCyc:G6947-MONOMER; -.
DR   PRO; PR:P76221; -.
DR   Proteomes; UP000000318; Chromosome.
DR   Proteomes; UP000000625; Chromosome.
DR   GO; GO:0005886; C:plasma membrane; IDA:EcoCyc.
DR   InterPro; IPR015414; TMEM64.
DR   InterPro; IPR032816; VTT_dom.
DR   PANTHER; PTHR12677:SF59; TVP38_TMEM64 FAMILY INNER MEMBRANE PROTEIN YDJZ; 1.
DR   PANTHER; PTHR12677; UNCHARACTERIZED; 1.
DR   Pfam; PF09335; SNARE_assoc; 1.
PE   1: Evidence at protein level;
KW   Cell inner membrane; Cell membrane; Membrane; Reference proteome;
KW   Transmembrane; Transmembrane helix.
FT   CHAIN           1..235
FT                   /note="TVP38/TMEM64 family inner membrane protein YdjZ"
FT                   /id="PRO_0000198634"
FT   TOPO_DOM        1..13
FT                   /note="Periplasmic"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        14..34
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        35..64
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        65..85
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        86..95
FT                   /note="Periplasmic"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        96..116
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        117..176
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        177..197
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        198..202
FT                   /note="Periplasmic"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        203..223
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        224..235
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000255"
FT   REGION          90..199
FT                   /note="VTT domain"
FT                   /evidence="ECO:0000305|PubMed:30093494"
SQ   SEQUENCE   235 AA;  26160 MW;  8B025135FDC66DDD CRC64;
     MMMMQSRKIW YYRITLIILL FAMLLAWALL PGVHEFINRS VAAFAAVDQQ GIERFIQSYG
     ALAAVVSFLL MILQAIAAPL PAFLITFANA SLFGAFWGGL LSWTSSMAGA ALCFFIARVM
     GREVVEKLTG KTVLDSMDGF FTRYGKHTIL VCRLLPFVPF DPISYAAGLT SIRFRSFFIA
     TGLGQLPATI VYSWAGSMLT GGTFWFVTGL FILFALTVVI FMAKKIWLER QKRNA
//
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