ID   YPO4_CAEEL              Reviewed;        1131 AA.
AC   P53015;
DT   01-OCT-1996, integrated into UniProtKB/Swiss-Prot.
DT   01-OCT-1996, sequence version 1.
DT   27-MAR-2024, entry version 138.
DE   RecName: Full=Uncharacterized protein F31E3.4;
GN   ORFNames=F31E3.4;
OS   Caenorhabditis elegans.
OC   Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
OC   Caenorhabditis.
OX   NCBI_TaxID=6239;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Bristol N2;
RX   PubMed=9851916; DOI=10.1126/science.282.5396.2012;
RG   The C. elegans sequencing consortium;
RT   "Genome sequence of the nematode C. elegans: a platform for investigating
RT   biology.";
RL   Science 282:2012-2018(1998).
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DR   EMBL; FO080392; CCD63406.1; -; Genomic_DNA.
DR   PIR; T16217; T16217.
DR   RefSeq; NP_498519.1; NM_066118.3.
DR   AlphaFoldDB; P53015; -.
DR   BioGRID; 41188; 2.
DR   ComplexPortal; CPX-653; PAN2-PAN3 mRNA deadenylation complex.
DR   STRING; 6239.F31E3.4.1; -.
DR   iPTMnet; P53015; -.
DR   EPD; P53015; -.
DR   PaxDb; 6239-F31E3-4; -.
DR   PeptideAtlas; P53015; -.
DR   EnsemblMetazoa; F31E3.4.1; F31E3.4.1; WBGene00017951.
DR   GeneID; 175974; -.
DR   KEGG; cel:CELE_F31E3.4; -.
DR   UCSC; F31E3.4; c. elegans.
DR   AGR; WB:WBGene00017951; -.
DR   WormBase; F31E3.4; CE01269; WBGene00017951; -.
DR   eggNOG; KOG1275; Eukaryota.
DR   GeneTree; ENSGT00390000013978; -.
DR   HOGENOM; CLU_002369_0_0_1; -.
DR   InParanoid; P53015; -.
DR   OMA; TQELLWT; -.
DR   OrthoDB; 9810at2759; -.
DR   PhylomeDB; P53015; -.
DR   PRO; PR:P53015; -.
DR   Proteomes; UP000001940; Chromosome III.
DR   Bgee; WBGene00017951; Expressed in germ line (C elegans) and 4 other cell types or tissues.
DR   GO; GO:0000932; C:P-body; IBA:GO_Central.
DR   GO; GO:0031251; C:PAN complex; IBA:GO_Central.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; IBA:GO_Central.
DR   GO; GO:0000003; P:reproduction; IMP:WormBase.
DR   CDD; cd06143; PAN2_exo; 1.
DR   Gene3D; 3.90.70.10; Cysteine proteinases; 1.
DR   Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR   Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 1.
DR   InterPro; IPR013520; Exonuclease_RNaseT/DNA_pol3.
DR   InterPro; IPR048841; PAN2_N.
DR   InterPro; IPR028881; PAN2_UCH_dom.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR036397; RNaseH_sf.
DR   InterPro; IPR028889; USP_dom.
DR   InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR   InterPro; IPR036322; WD40_repeat_dom_sf.
DR   PANTHER; PTHR15728; DEADENYLATION COMPLEX CATALYTIC SUBUNIT PAN2; 1.
DR   PANTHER; PTHR15728:SF0; PAN2-PAN3 DEADENYLATION COMPLEX CATALYTIC SUBUNIT PAN2; 1.
DR   Pfam; PF20770; PAN2_N; 1.
DR   Pfam; PF00929; RNase_T; 1.
DR   Pfam; PF13423; UCH_1; 1.
DR   SMART; SM00479; EXOIII; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR   SUPFAM; SSF50978; WD40 repeat-like; 1.
DR   PROSITE; PS50235; USP_3; 1.
PE   4: Predicted;
KW   Reference proteome.
FT   CHAIN           1..1131
FT                   /note="Uncharacterized protein F31E3.4"
FT                   /id="PRO_0000065319"
FT   DOMAIN          489..864
FT                   /note="USP"
FT   DOMAIN          909..1074
FT                   /note="Exonuclease"
FT   REGION          1104..1131
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1104..1120
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1131 AA;  127175 MW;  DE5A4AB0C309E7DE CRC64;
     MASATTNQGN EWRFVAPINI NTTTENTVSC VKFDPHEDLF WIGSSTGKVT SLLPTNHFTR
     YSAFVVSNIS GVHSLEPTES LIFTLSDTML RATTRQGIPV AKFTSPSMTK MAASCHMPGT
     STFIMGGFQE KLIHYDFVKE KEIRTTELKA SENAIIIRYN GTNTFTADTR GNVFVKNSKN
     CETIHTLDCH QDQVLDFDVQ GNKLITCGVS MNRLKNMDQF IKVYDLRMYK ALSPIGMPYL
     PQFARFMPSY CERVCVTYQT MYNQPGQTAT WSNHPAGVKM FDLNSNGNSA EFPIETSLIS
     AFDFSSNKNF IAVGNHCGIV NVFADRDQPQ VNENSKETVF AAPPVQPPLS FAIDDTTQTF
     GSIPLGFSQE PLVSDWPTEL TQIVYRRRKP PTEQTNVKSI HYLSQIKNPR INSKLKRHNI
     VPYFFEQEEL IEASNDHGSK EEAPQEMKRI KVSKLYKKRP LIVNQVPARR GNSQDETQET
     YTWNIIRHVT MQSTHGMNLV ANTLVQVAYS LSPIRSIVLR HICTEDSCIT CELHFLFTAF
     SSKIGDNSGM LTNNLAWALA RNGVSLKAGG VLSATQQIIK TVIDDVARTD ASGSICSKFD
     RHLRCIRCRG LQQQESVTDH LLKLNYAPVY QASLCQLIEK SLHIGDDSGE IECEDCKQMS
     RMECKRKVRE LSPVLLIDTN ASSNGFVEFW RRQLSLFERK PGGNRSSALG TVPESPSEKK
     NCRFGTDCRN KKTCKFVHGL VDWPAEQTKL LEDVDLPEWA HYIPSRIAAQ LCEGIVRLSD
     VSDLPDYDEP SAVIYELDAM IHAVGNGEND VNWTHPVTLL RESPVISSSW TLINEQLVSR
     LHDHEARHID GRWKLPALLA YKKKNFDVKT SEDIISNDLF LAEENLASNG MTSLAVQSLE
     ELPKEKELVG LDAEFIKIKT DLLEFDGKTV QMRAVGRASC VDSTGERIIF DDHVKLTDDV
     EVVDYLTKFS GIVKADLCPT TSEKYLTTHK RLLLRMHVLI QRGVTFVGHA LHNDFTVLNV
     HVAESQIIDT VTLMRLGTQR MLSLQFLVKE ILGETIQMEA HDSVVDARYA LKLYRKYLEI
     KEQGLLGSEM RRIYTILPCP SPNQTSSPLV VSTTRKTPED TNPADAAPKS V
//