KEGG   Usitatibacter palustris: DSM104440_02524
Entry
DSM104440_02524   CDS       T06995                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
upl  Usitatibacter palustris
Pathway
upl02024  Quorum sensing
upl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:upl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DSM104440_02524 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    DSM104440_02524 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:upl03019]
    DSM104440_02524 (hfq)
   03036 Chromosome and associated proteins [BR:upl03036]
    DSM104440_02524 (hfq)
Messenger RNA biogenesis [BR:upl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     DSM104440_02524 (hfq)
Chromosome and associated proteins [BR:upl03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    DSM104440_02524 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: QJR15698
UniProt: A0A6M4HA04
Position
complement(2619553..2619789)
AA seq 78 aa
MSNKGQLLQDPFLNTLRKEHVPVSIYLVNGIKLQGQIESFDQYVVLLKNTVTQMVYKHAI
STVVPARPVSVPLEHSEG
NT seq 237 nt   +upstreamnt  +downstreamnt
atgagcaataaagggcaactgctacaagacccgttcctcaacacgttgcgcaaggaacat
gtcccggtctcgatctacctggtgaacggcatcaagctgcagggccagatcgaatcgttc
gaccaatacgtcgtcctcctcaagaacaccgtcacccagatggtctacaagcacgccatc
tcgacggtggtcccggcacgacccgtgtcggtcccgcttgagcattcggaaggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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