KEGG   Ureaplasma urealyticum: UUR10_0179
Entry
UUR10_0179        CDS       T00781                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
uue  Ureaplasma urealyticum
Pathway
uue03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:uue00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    UUR10_0179 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:uue03021]
    UUR10_0179 (rpoC)
   03400 DNA repair and recombination proteins [BR:uue03400]
    UUR10_0179 (rpoC)
Enzymes [BR:uue01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     UUR10_0179 (rpoC)
Transcription machinery [BR:uue03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     UUR10_0179 (rpoC)
DNA repair and recombination proteins [BR:uue03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      UUR10_0179 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23 Apocytochr_F_C
Other DBs
NCBI-ProteinID: ACI59983
UniProt: B5ZAZ4
Position
213621..217538
AA seq 1305 aa
MSQKGIKSLTISIASPEQILSWSKGEITKPETINYKSLKPEPNGLFDESIFGPSKDYECY
CGKYRKVKHKGKVCERCHVEITESIVRRERMGHIELAAPVAHIWFTKELPSPSKISLLLD
ITYKEVDQVVYFVNYIVLDEGNNEYDGKSIFNKKEVLDLTSPKNSIRSRNKLRRTLRNIQ
ERIEEELNHEREALIQDFDYRLAVTYDQMLKDSNIPFSVKDVMAFIEKHTGVRFGIGAEA
IHELLEKLNLEEEHEKIKQAIQNSPNAYDQKTKRLLRRLECVRWIKDSGSKPEWMVMTRI
PVTPSETRPIISLDGGRFTTSDTNNFYRKIIIRNERLKQMQATDAPEILLDNEKRLLQEA
VDSLFDNNSRKKPVVGKDKRPLKSLSNHLKGKQGLFRQNLLGKRVDYSGRSVIVVGPELK
MYEVGIPALMILKLFRPYIISELIRKRDEFGNEIQPICANIKLAEQKILAQDDEIWPVVE
KVIKQRPVILNRAPTLHRLGIQAFEPKMVDGKAIRLHPLVTTAFNADFDGDQMAVHIPLS
KEAVAEARSILLASWHILGPKDGKPIITPTQDMILGIYYLTKEKFPQPIEEMILKDPVQA
RIEFINHFHIFATQDEAIRAYKLKTIRINDVIGITTKAFDNKSFSKEGILVTTVGKIIFN
QAFPTNFPYINDVKNLYGDNQFEIIGMHESILDYLKAYNLKEPLTKKTLSTVIDYLYKVS
EIEVVPQTMDKIKALGFKYSMISATSISAFDIPSYDQKYEYFKETDELVAKLREFYLDGK
LTDDERYTKVVQAWSQTKDKVTHDIEKLINSDEYKDNPIVIMAKSGARGNTSNFTQLAGM
RGLMSKSYNYDQKNNSGVIKDTIEIPIKHSFIEGLSVSEYFNSSFGARKGMTDTAMKTAK
SGYMTRKLVDSTQAVVIKGNDCGTKEGIIVREIRNTKDNTSIESLKDRIVGRFSINPIYD
TKNKLIIEGDKLITNEIANMIQNSGIREVEVRSPLHCSSLYGVCQKCFGLDLSTNKLIET
GTAIGVIAAQSIGEPGTQLTMRTFHTGGVAGDTNITQGFERIKQLFDCIQPQENEKAIIS
QVKGTVDRIEKDSNTNGYNVVIKYNKDNFVSYPTRPNAVLRIKTGDNVVAGQKITEGSID
VNDLLKYAGIENVRHYIIKEVQKVYRMQGIEISDKYIEVIISQLTNKVTITNPGDSGLFV
GETISINEFTEVAQSMLVNKKKPPSAINQVFGLDHAPSKSGSFLSAASFQDTKKILTDAA
ARSQKDMLIGLKENVILGNLIPAGTGLKDVEEVIAYGEEMYKKQY
NT seq 3918 nt   +upstreamnt  +downstreamnt
atgagtcaaaaagggattaaatcactaacgatttccattgcttcaccagaacaaatttta
agttgatcaaaaggtgaaattactaagcctgaaacgattaattacaaatcattaaaacca
gagccaaatgggttgtttgatgaaagtatttttgggccttcaaaagattatgaatgttac
tgtggaaagtatcgtaaagtaaaacataagggtaaagtttgtgaacgttgtcacgttgaa
attactgaatcaatcgtgcgtcgcgaacgaatgggtcatattgaattagcagcacctgtt
gcccacatttgatttacaaaagaattaccttctccatcaaaaatttcattattattagat
attacatacaaagaagttgaccaagtagtttattttgttaattacatcgttttagatgaa
ggaaacaacgaatatgatggtaagtcaatttttaataaaaaagaagttttagatttaaca
tcaccaaagaattcaattagatcacgtaataaattacgtcgtacattacgtaatattcaa
gaaagaattgaagaagaattgaatcacgaacgtgaagcattaattcaagattttgattat
cgtttagctgtaacatatgatcaaatgttaaaagattctaatattcctttttcagtgaaa
gatgtaatggctttcattgaaaaacacactggtgtacgttttggaattggtgctgaagct
attcatgaattattagaaaaactaaatcttgaagaagaacacgaaaagattaaacaagct
attcaaaattcacctaatgcttatgatcaaaaaacaaaacgtttactacgtcgtttagaa
tgtgtaagatgaattaaagattcaggttcaaaaccagaatgaatggtaatgacaagaatt
cctgttactccatctgaaacacgaccaattatttctttagatggtggtcgttttacaact
tctgatacaaataatttttatcgtaaaattattatccgtaatgaacgtttaaaacaaatg
caagcaacagatgctccagaaattttattagataatgaaaaacgtttattacaagaagca
gttgactcattatttgataataactcacgtaaaaaaccagttgttggtaaagataaacgt
cctttaaaatcattatcaaatcatcttaaaggaaaacaagggttatttagacaaaactta
ttaggaaaacgtgttgattactcaggtcgttctgtaattgttgttggtccagagttaaaa
atgtatgaggtaggtattcctgctttaatgattttaaaactatttagaccatacattatt
tctgaattaattcgtaaacgtgatgaatttggtaatgaaattcaaccaatttgtgccaat
attaaattagctgaacaaaaaattcttgcacaagatgatgaaatttgaccagttgttgaa
aaagttattaaacaacgtcctgtaattttaaaccgtgccccaacattacaccgtttaggt
attcaagcctttgaaccaaaaatggtagatggaaaagcgattcgtttacacccattagtt
acaactgcttttaatgcggacttcgatggggaccaaatggctgttcacattcctttatca
aaagaagcagtagctgaagcacgttcaattcttttagcttcatgacatattcttggacca
aaagatggaaaaccaattattactccaactcaagatatgattttaggaatttactattta
acaaaagaaaaattccctcaaccaattgaagaaatgatacttaaagatccagttcaagca
agaattgaatttattaatcatttccacatctttgcaacacaagatgaagccattcgtgct
tataaactaaaaacaatacgaatcaatgatgtaattggaattacaacaaaagcttttgat
aataaatcatttagcaaagaaggtattttagttacaacagttggaaagattattttcaac
caagccttcccaacaaatttcccatatattaatgatgttaaaaatttatatggtgataac
caattcgaaattattggaatgcatgaaagcattttagattatctaaaagcttacaaccta
aaagaacctttaactaaaaagactttatcaacagtaattgattatttatacaaagtttct
gaaattgaagttgtacctcaaacaatggataaaattaaggctttagggtttaaatactca
atgatttcagcgacaagtatttctgcttttgacattccatcttatgatcaaaaatatgaa
tacttcaaagaaactgatgaactagttgcaaaacttcgcgagttttatttagatggaaaa
ttaactgatgatgaacgatatacaaaagttgttcaagcttgatcacaaacaaaagacaaa
gttactcacgatattgagaagttaattaattctgatgaatataaagacaatccaatcgta
atcatggctaaatcaggagctcgtggtaatacatcaaactttactcaattagcagggatg
cgtgggttaatgtcaaaatcatataattatgatcaaaaaaataatagtggtgttattaaa
gatacaattgaaattccaattaaacactcatttattgaaggattatcagttagtgaatac
ttcaactcatcatttggtgctcgtaaagggatgaccgatacagcgatgaaaactgcgaaa
tcaggatacatgactcgtaaattagttgattcaacacaagctgttgttattaaaggtaat
gattgtggtacaaaagaaggtattattgttcgtgaaattcgaaatacaaaagataatact
tcaattgaatcattaaaagatcgtattgttggacgatttagtattaatccaatttatgat
acaaaaaataaattgattattgaaggtgataaattaattactaatgaaatcgctaatatg
attcaaaattcaggtattcgtgaagttgaagttcgttcaccactgcattgttcatcactt
tatggtgtttgtcaaaaatgttttggtttagacttatcaacaaacaaattaatcgaaact
ggtacagcaattggggttattgctgctcaatcaattggggaaccaggtacacagttaaca
atgcgtaccttccatactggtggggttgctggtgatactaatattacccaaggttttgaa
agaattaaacaattatttgattgcatccaaccacaagaaaatgaaaaagcaattatttca
caagttaaaggcactgttgatcgaattgaaaaagattcaaacactaatggttataatgtt
gtaattaaatacaataaagataactttgtaagttatccaacacgtccaaacgctgtttta
cgtattaaaacaggtgataatgttgttgctggtcaaaaaataactgaaggatcaatcgat
gttaatgatttactaaaatatgcaggtattgaaaatgtacgtcattacattattaaagaa
gttcaaaaagtttatcgtatgcaagggattgaaatttcagataaatatattgaagtaatt
atttcacaacttacaaataaagtaacaattactaatccaggtgattcaggattgtttgtt
ggggaaacaattagtattaatgaatttactgaagttgctcaaagtatgcttgttaataag
aaaaaaccaccaagtgcaattaaccaagtatttggtttagatcatgcaccaagtaaatca
ggttcattcttatctgctgcttcattccaagatacaaagaaaatcttaaccgatgctgct
gcacgttcacaaaaagacatgttaattggtctaaaagaaaacgttattttaggaaaccta
attcctgctggaactggattaaaagacgttgaagaagtgattgcttacggtgaagaaatg
tataaaaaacaatactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

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