KEGG   Vibrio alfacsensis: D1115_03385
Entry
D1115_03385       CDS       T05841                                 
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
vaf  Vibrio alfacsensis
Pathway
vaf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vaf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    D1115_03385 (pnp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vaf03019]
    D1115_03385 (pnp)
   03016 Transfer RNA biogenesis [BR:vaf03016]
    D1115_03385 (pnp)
Enzymes [BR:vaf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     D1115_03385 (pnp)
Messenger RNA biogenesis [BR:vaf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     D1115_03385 (pnp)
Transfer RNA biogenesis [BR:vaf03016]
 Prokaryotic type
  tRNA degradation factors
   D1115_03385 (pnp)
SSDB
Motif
Pfam: RNase_PH PNPase RNase_PH_C S1 KH_1 S1_2 KH_2 SLS1_KH2 DUF3016 DUF5813 Virulence_fact
Other DBs
NCBI-ProteinID: AXY00413
UniProt: A0A347UNI4
Position
I:676696..678831
AA seq 711 aa
MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVAGQDFFPL
TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVMS
VNPDVQPDIVTMIGTSAALAISGIPFNGPIGAARVGHINGQLVLNPSNTELDASKLDLVV
AGTESAVLMVESEADNLTEEEMLAAVVYGHDQQQVVINAINEFKAEVATPAWDWVAPEEN
TALVTKIAELAEAKLVEAYQITEKMARYDRIHEIAAEVNEALLAQDPEADTKEIHTIFHD
LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQAIVTATLGTQ
RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD
EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS
DILGDEDHLGDMDFKVAGTHTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE
AISGARDDISEFAPRIHTMKISADKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA
TEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTILPGKDGLVHISQIAEKRV
EKVSDYLAEGQEVQVKVLEIDRQGRVRLSMKEAVEKPAEEAAIEAPEAKDE
NT seq 2136 nt   +upstreamnt  +downstreamnt
atgttcgaaaaaccagttgttaaaacgttccagtacggtaaccacacagttaccctagaa
actggcgttatcgctcgtcaagctacagcagcagtaatggttacaatggacgatacagca
gtattcgtttcagttgtaggtaagaaagaagcagttgcgggtcaagatttcttcccacta
actgtaaactaccaagagcgtacatacgctgcaggtaaaatccctggtggtttcttcaag
cgtgaaggtcgtccttctgaaggtgaaacgttaacggctcgtctaattgaccgtccaatc
cgtccactattcccagatgcattcaaaaacgaagttcaagttattgcaacagtaatgtct
gtaaatccagacgttcaacctgacatcgtaacgatgatcggtacttctgctgcgcttgct
atttctggtattccgttcaacggccctatcggtgcagcacgtgttggtcacattaacggc
caactagtactaaacccaagcaatactgagctagatgcatctaaactagacctagtggtt
gcaggtacagaatcagcagtactaatggttgaatctgaagcagacaacctaactgaagaa
gaaatgctagcagcggttgtttacggtcacgaccaacaacaagttgttatcaatgcgatc
aacgaattcaaagctgaagtggcaacaccagcttgggattgggtagctcctgaagagaac
acagcacttgtaactaagattgctgaactagcagaagctaagcttgtcgaagcgtaccaa
atcactgagaagatggctcgttacgatcgcattcatgaaattgcagcagaagtaaacgaa
gcgctacttgctcaagatcctgaagcggatacaaaagaaatccacactatcttccacgat
ctagagaagacagtggtacgccgtagcatcatcgctggcaacccacgtatcgatggtcgt
gagaaagacatggttcgtgcgctagacgtacgtactggcgttcttccacgtactcacggt
agtgcgctattcactcgtggtgaaacacaggcgatcgttacagcgactctaggtacacaa
cgtgatgctcaaatcatcgatgagctaactggtgagcgtaaagatcacttcctactacac
tacaacttccctccatactgtgtaggtgaaactggttttgtaggttctcctaagcgtcgt
gaaatcggccacggtaagctggctaagcgtggtatcgctgcggtaatgccatctgtagat
gagttcccatacacagtacgtgtagtatcagaaatcacagaatctaacggttcttcttca
atggcttctgtatgtggtacttctcttgctcttatggacgcaggtgtgccaatcaagtca
tctgttgcgggtatcgcaatgggtcttgttaaagaaggcgacgactttgttgtgctttct
gacatcctaggtgacgaagaccaccttggtgatatggactttaaagtagcaggtactcac
acaggtatcacagcacttcaaatggacattaagatcgaaggtatcactaaagagatcatg
caaattgcgcttaaccaagctcaaggtgcacgtaagcacatcctatctgtaatggatgaa
gcaatctctggcgctcgtgatgacatttctgagttcgctccgcgtattcacacaatgaag
atcagcgcagacaagatcaaagacgttatcggtaaaggtggtgcagttatccgtgctcta
acggaagagactggtacaactatcgaaatcgaagatgacggtacaatcaagattgcagca
acagaaggcgctgcagcgaaagaagcaattcgtcgtatcgaagagatcactgctgaagtt
gaagtaggccgtatctacactggtaaagttgcacgtctagctgatttcggtgcatttgta
acgattcttccaggtaaagacggtctagtacacatttctcaaattgctgaaaaacgcgtt
gagaaagtatctgactacctagcggaaggccaagaagttcaagttaaagtgcttgaaatc
gaccgccaaggccgtgtacgtctaagtatgaaagaagcggttgaaaagcctgctgaagaa
gcggctattgaagcgcctgaagctaaagacgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (21)   

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