KEGG   Vibrio alfacsensis: D1115_09380
Entry
D1115_09380       CDS       T05841                                 
Name
(GenBank) 3'-5' exonuclease
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
vaf  Vibrio alfacsensis
Pathway
vaf03030  DNA replication
vaf03430  Mismatch repair
vaf03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vaf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    D1115_09380
   03430 Mismatch repair
    D1115_09380
   03440 Homologous recombination
    D1115_09380
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vaf03032]
    D1115_09380
   03400 DNA repair and recombination proteins [BR:vaf03400]
    D1115_09380
Enzymes [BR:vaf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     D1115_09380
DNA replication proteins [BR:vaf03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     D1115_09380
DNA repair and recombination proteins [BR:vaf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     D1115_09380
SSDB
Motif
Pfam: RNase_T RNase_H_2 CAF1
Other DBs
NCBI-ProteinID: AXY01346
UniProt: A0A347UR67
Position
I:1898361..1899092
AA seq 243 aa
MRYVMIKKLFQKPTIQWPTKFKHKQERATDERLVAFYGHDLPDANTPISEVEFVAMDFET
TGLDPHKNGIITIGLVPFNLNRIFLRQSKHWKVRPQEKLAEDSVIIHGITHSDLIDAPDL
NEILSDILASLSGKIVVVHYRRIEREFLDHALRSRIDEGIEFPVLDTLEIEANIQQKLHG
GIWNKVKGKKPKSLRLAQSRRRYGLPDYTPHHALTDAIATAELLQAQIAHHYQPDQPIGD
FWL
NT seq 732 nt   +upstreamnt  +downstreamnt
gtgaggtacgtgatgattaagaagttatttcaaaaaccgaccattcaatggccaactaag
tttaagcataaacaagagcgagcaacggatgagcggctcgttgcgttttatggccatgat
ctgcccgatgcaaacacgccaatctctgaggttgagtttgttgcaatggacttcgaaacc
actgggctagatcctcataaaaacggcattatcaccatagggttagtgccctttaatctc
aatcgaatttttttacgtcaatccaagcattggaaagtaagaccgcaagaaaagctggct
gaagattctgtcatcattcacggtattacccatagtgatctgattgatgcgcctgatctc
aatgaaattctcagtgatattttggctagcctgagcggaaaaattgtcgtggtgcactat
cgaagaattgaacgcgagttcctcgaccatgcgcttcgtagccgtatcgacgagggcatc
gagttccccgtactagacacattagagattgaagcgaatattcagcaaaaacttcatggt
ggcatctggaacaaagttaaagggaaaaagccaaaatcactgcgcttagcccaatctcgt
cgacgatatggcctgccggactatacgcctcatcacgcgctaaccgatgccatagcaacg
gcagaactattgcaggctcaaatcgctcaccactatcagccagatcaacccatcggcgat
ttctggctttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

Download RDF
DBGET integrated database retrieval system