KEGG   Verticillium alfalfae: VDBG_05893
Entry
VDBG_05893        CDS       T02227                                 
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) lyase
  KO
K10771  AP endonuclease 1 [EC:3.1.11.2]
Organism
val  Verticillium alfalfae
Pathway
val03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:val00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    VDBG_05893
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:val03400]
    VDBG_05893
Enzymes [BR:val01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.2  exodeoxyribonuclease III
     VDBG_05893
DNA repair and recombination proteins [BR:val03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    AP endonucleases
     VDBG_05893
SSDB
Motif
Pfam: AP_endonuc_2
Other DBs
NCBI-GeneID: 9537745
NCBI-ProteinID: XP_003003451
UniProt: C9SLW9
AA seq 370 aa
MPLAARTAVTSLKRAMYIGAHVSGAGGVQNAIDNAASIGANAFALFLKSQRKWASPPLAA
DARAQFVSRAAEHGYDAAAHVLPHGSYLVNLAQADDAKAEQAYGCFVDDLARCDALGVRL
YNFHPGNTGGAPRAAACARIAAQLNRAHAATTAVVTVLENMAGAGNVVGTRFEDLRDVIA
LVDDKDRVGVCIDTCHAFAAGYDMRTPDAFAATMTAFDDIVGLQYLKALHLNDSKAPFDS
HRDLHANIGTGFLGLRAFHSIVNYAPFAGLPMVLETPIDRKGPDGKSVEDRQVWADEIKL
LESLIGMDAESDAFAALERELQDRGAGERQKIQDQVDKKTAKETKKAAPKKAAAKPRGRK
KKEETDDESD
NT seq 1113 nt   +upstreamnt  +downstreamnt
atgccgctcgccgcccgcacggccgtcacgtcgctgaagcgcgccatgtacattggcgcg
cacgtctcgggcgccggcggcgtgcagaacgccatcgacaacgccgcgtcgatcggcgcc
aacgcgttcgcgctgttcctcaagtcgcagcgcaagtgggcgtcgccgccgctcgccgcc
gacgcgcgcgcgcagttcgtgtcgcgcgccgccgagcacggctacgacgcggcggcgcac
gtgctgccgcacgggtcgtacctcgtcaacctcgcgcaggccgacgacgccaaggccgag
caggcgtacggctgcttcgtcgacgacctcgcgcggtgcgacgccctcggcgtgcgccta
tacaactttcacccgggcaacacgggcggcgcgccgcgcgcggccgcctgcgcgcgcatc
gcggcccagctgaaccgcgcccacgccgccacgaccgccgtcgtcacggtgctcgagaac
atggccggcgccggcaacgtcgtcggcacgcgcttcgaggacctgcgcgacgtcatcgcc
ctcgtcgacgacaaggaccgcgtcggcgtctgcatcgacacgtgccacgcctttgccgcc
ggctacgacatgcgcacgcccgacgccttcgccgccaccatgaccgcctttgacgacatt
gtcggcctccagtacctcaaggccctgcacctcaacgacagcaaggccccgtttgactcg
caccgcgacctccacgccaacatcggcaccggcttcctcggcctgcgcgccttccactcc
atcgtcaactatgctccctttgccggcctgcccatggtgctcgagacgcccatcgaccgc
aagggacccgacggtaagtcggtcgaggacaggcaggtctgggccgacgagatcaagctg
ctcgagagcctcatcggcatggacgccgagagtgacgcctttgccgccctcgagcgcgag
ttgcaggacaggggtgccggggagaggcagaagatccaagaccaagtcgacaagaagaca
gccaaggagacgaaaaaggcggcgcccaaaaaggcggctgccaaacccagggggcggaag
aagaaggaggagacggacgacgagagcgactga

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