KEGG   Verticillium alfalfae: VDBG_06740
Entry
VDBG_06740        CDS       T02227                                 
Name
(RefSeq) exosome complex exonuclease RRP45
  KO
K03678  exosome complex component RRP45
Organism
val  Verticillium alfalfae
Pathway
val03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:val00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VDBG_06740
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:val03019]
    VDBG_06740
Messenger RNA biogenesis [BR:val03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     VDBG_06740
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 9537304
NCBI-ProteinID: XP_003003178
UniProt: C9SPB5
AA seq 271 aa
MPREAEPSVNEKEFILKALHEGVRLDGRPFDQYRTIDISFGDEYGVVDVSLGKTSSPPSS
RPWRRRTWSRASPPTRRCCCRGCSRRRSAAPAPSTWSRSASSPAPKVWSVRADVHVVSHD
GNIVDAACLAAVAALRHFRKPDAQVEGEDLTVFTPAEREPVPLGWLHSPFCVTFAHFAAK
DDSSPDHDGGDVTLLDPDWREEQLRVASCTISLNKLGEVCQVSKLGGDAVEATTLLQCAA
RRGPQGQGAVGPGRQDAGRRRQEERQGRPDG
NT seq 816 nt   +upstreamnt  +downstreamnt
atgccgcgagaagccgaaccctcggtcaacgaaaaggagttcatcctcaaggccctgcat
gaaggcgtcaggttagacggccgtcccttcgaccagtatcgcaccatcgacatttccttt
ggcgatgagtacggcgtcgtcgacgtgagcctcggcaagacgagctcgccaccgagctct
cgcccatggcgtcgccgcacctggagccgggcaagcccaccgacacggagatgctgctgt
cgcggctgctcgagaagacgatccgccgctccggcgccctcgacatggagtcgctctgcc
tcgtcgccggcgccaaaggtgtggagcgtccgcgccgacgtccacgtcgtctcgcacgac
ggcaacattgtcgacgccgcctgcctcgccgccgtcgccgccctgcgccactttcgcaag
cccgacgcccaggtcgagggcgaggacctcaccgtcttcacgcccgccgagcgcgagccc
gtgcccctcggctggctgcactcgcccttttgcgtcacctttgcccacttcgccgccaag
gacgacagcagccccgaccatgacggtggcgacgtgacgctgctcgaccccgactggcgc
gaggagcagctgcgcgtcgcctcgtgcaccatcagcctcaacaagctcggtgaggtgtgc
caggtgtccaagctcggcggcgacgccgtcgaggccacgacgctgctccagtgcgcggcc
cgtcgcggcccgcaaggtcaaggagctgtcggacctggtcgacaggacgctggccgccga
cgccaagaggagagacaagggcggcctgatggctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (165)   
   KEGG ORTHOLOGY (1)   
   RefGene (161)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (174)   

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