KEGG   Verticillium alfalfae: VDBG_09319
Entry
VDBG_09319        CDS       T02227                                 
Name
(RefSeq) hypothetical protein
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
val  Verticillium alfalfae
Pathway
val03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:val00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VDBG_09319
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:val03019]
    VDBG_09319
Messenger RNA biogenesis [BR:val03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     VDBG_09319
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     VDBG_09319
SSDB
Motif
Pfam: Not1 CNOT1_CAF1_bind DUF3819 CNOT1_TTP_bind CNOT1_HEAT
Other DBs
NCBI-GeneID: 9534212
NCBI-ProteinID: XP_003000824
UniProt: C9SWP4
AA seq 1684 aa
MVPPSRAGSFSPNPAQTLQTGNIHSPNPSQGGQFSSGASPSTHSPTGTNPLAKIVVAQIY
LLLSTIKEDKGRVKRETQADQLKKLLDDHGMEVFSKYFTRLVAGNAGQIFPGLTRPVSNP
GNYHLLVNEMRNIAHDANQAIKIAESIDSGTEDIFRDFDLSTFMEHFKLDALEKTILALA
FKLGSRSDLKTKADAILSTNFPTFVNIIARPDLEEHADLTDSFIATIVDRFIHLWQRDRE
WVTQRLIDAHAVKPTDLPLIFEHAVKHKWLEDLVSLTSGFGLDLAAFAHAEGYLDLGHWA
RQNSERSAEVARSLQQFLLIKANLELQYQRPPDGQSIVKSTTLQVKTVSALLQILEDFMP
KAPVHDLILVQRSCITVYPRLINYGEGYDDVIDANGADGNALPLAANAKMEEHYKKMYGD
EIQVRNIVDVLRRYKHSRDPLDQDVFACMIHGLFDEYAHYVDYPLEALATTAVLFGGIIS
HKLIADLPLKIGLGMILEAVRDYPPDVSMYKFGLQALMQLFSRFREWPGFCKQLLQIPGL
QGTEAWKKAEDVVREHEEEGSRSRTGPNPPTHAAAFSAEPVPNGGADESRDADRQAPPFA
SINAESSFPALAFESPSDDTQGKIQFVLNNLTETTLQSMCKELRDMVEQRHQQWFASHLV
EERAKMQPNYHQVYLDLVKLFEDKVLWAEVLRETYLSVARMLNSEATITNPTERSHLKNL
GGWLGLLTLARDRPIKHKNIAFKQLLLEAHDTKRLVVVLPFVCKVLIQGIHSTVFRPPNP
WLMDIIHLLIDLYHHAELKLNLKFEIEVLCKGLSLDHKTIEPSGEILNRTAADEPLELLG
HDNLESFDNLSLNGLATGVSAGLSPQILPASIPDLAPMIQIPPTNEMVVATTRLHDIVRT
ALTRALQDIIQPVVDRSVTIAAISTREMIRKDFATEPDENRIRTSAINMVKATAGSLALV
TSKEPLRGNFTNYLRNLSNDLPQGLPEGTIIMCVNSNLDLACNIIEKQAEERAVPEIEEM
IETELDARRRHRAQRPNEPYVDPSLSRPHPVLDVVDALVQHMIKTSQNSEEFALFAAEQI
IQLIFSQVEDNLALESLVHVLETLRKISGPGLNNRVTTLFRQQPGSSFLRLPLLAALLRT
DLIDWRNVDVALAKTVQQRKEGSLEFLEQMIDLTLLGTRPLALYGDFVRTLDVAWTLVHD
DPESPVSQRLLTKLSSQGISLSVAADTDIFASTRSKWRMFLMNGFIFYGNPNAPDDSAVL
FARQKQPEVLLRNKDDLFFLSGSPSTSVLTALLTLVLSHHHLKRVDPFNQRVFHRLLSVL
LHEVGAIESQVDELEQLDMLLRIASRLADLSPRYLPGFAYGWLSLIQHRAFLPVILKERA
GWSAYTTLLRMLFEFVGEQLKAPEPTAVARDTYRATLKLLVVLQHDFTEYIAAHSDQLRI
SLPPHCKQLINAILAANPASQDALSPNADQSNGLKAKEGTEDDTPILLREHGLLGVVDQA
LHTGPSEDGLAHMTRAIIESDARETGFALVSINANLSVIEAIILHIGKYAVGRLAQGGES
FNPSSTDVAILSLLMHELAPEPRYYLVVGMVNQLRFPGDMTSYFSRVLLEIFGRDLNDPD
DTEIRQQITRVLWERLIGFWPQPWGLMITVLELLKNEKYAFFDLPFVKSSPEIIDRFHAV
LQRA
NT seq 5055 nt   +upstreamnt  +downstreamnt
atggtgccgccatcaagagcgggatctttttcaccaaatcctgcacagactctgcagaca
ggaaacatccactcgcccaacccatcgcaaggagggcagtttagctcgggcgcgagtccc
agcacgcatagcccgaccggaaccaatccactggctaagattgtcgttgctcagatatac
ctgcttttgagtaccattaaggaggataagggtcgcgtcaaacgggagacccaggcggat
cagcttaaaaagctcctcgatgatcacggcatggaggtgttttctaaatacttcacccgg
cttgttgccggcaacgctggccagatttttcctggcttgacgcgaccggtctcgaatcct
gggaactaccacctccttgtcaatgaaatgcgaaatattgctcacgatgcgaatcaagca
ataaaaattgccgaatccatcgattctggtacagaggatatattccgtgattttgacctg
tcgactttcatggaacattttaaacttgatgctctcgagaagaccatacttgcgcttgca
ttcaagcttgggtcgcgatctgacctgaagaccaaggccgatgccatcctctcaacgaac
tttcctacttttgtcaacattatcgctcgtccagacctcgaggagcatgccgacttgacc
gactcattcattgccactatcgtcgaccgcttcattcacctttggcaaagggaccgggaa
tgggtgactcaaaggcttattgacgcccacgccgtcaagccgaccgatctgcctctaatc
ttcgagcatgcagtcaagcacaagtggctcgaggacctcgtttcgcttaccagtggcttt
ggtttggacctcgcagctttcgcacacgcagaaggctacctagaccttggacactgggct
cgacagaattccgaacggagcgccgaagtagcccgatccctacaacaattcttgcttatt
aaggcaaatcttgagcttcaatatcaacgcccgcctgatgggcagtccatcgtcaaatcc
acgacccttcaagtcaaaaccgtctcggcacttctccagatattggaagacttcatgccc
aaggctccggtccacgacttgatcctggtgcagcggtcttgtatcactgtctacccccgc
ctgatcaactatggggaagggtatgacgacgttatcgatgcgaacggtgctgacggcaat
gcattgccattggctgcaaatgcgaaaatggaagagcactacaaaaagatgtacggcgac
gagatacaggttcggaatatcgtcgacgtcctccgtcggtataaacactctcgcgatccc
ctcgatcaggacgtcttcgcttgcatgattcatgggcttttcgacgagtacgctcattac
gtggactatccgctcgaggcactcgcaaccacagcggttctatttggcggtatcatatcg
cataagctgattgcggatctaccgctcaagatcggactgggtatgattcttgaagctgtg
agagactatcctccagatgtctccatgtataagttcggtctgcaagctttgatgcaactt
ttttcacgttttagagagtggcctggattctgcaagcaactgctgcagatacccggcctc
caaggaacagaagcatggaaaaaggccgaggacgttgtccgagaacatgaagaagagggc
agccgttcgcgcaccggccccaacccacccacccacgcagctgcgttctctgctgagcct
gtccccaacggcggtgctgacgagtcccgtgatgctgatcgccaagcacctccatttgcc
tcgatcaacgcagaaagttcattccccgcgcttgcatttgagagtccgtcggatgacacc
cagggaaagatccagttcgtcctcaacaatcttacagagaccactctccagtctatgtgc
aaggaactacgagacatggtcgagcagaggcaccagcagtggtttgccagccatcttgtc
gaagagcgtgcgaagatgcaacccaactatcatcaagtctacttggatttggtgaaactt
ttcgaggacaaggtcctttgggcggaggtcttgagagagacttatctcagcgttgcacgt
atgctcaactccgaggcgaccatcactaaccctaccgagcgctctcacctcaagaatctc
ggtggttggctgggacttttgaccttggcacgggacagaccgatcaagcacaagaacatt
gcttttaagcagcttctcctcgaggcacacgataccaagaggctggttgttgttcttccg
ttcgtctgcaaggttctgattcaaggaattcactcaacagtctttcgcccccccaacccc
tggctcatggatatcattcacctactgatcgacctttatcatcatgcggaactcaaactc
aaccttaaattcgagatcgaggtgctctgcaaaggacttagcttggaccataagacaatc
gagccctcgggcgagattcttaatcgtaccgctgccgacgagccattagagcttctcggt
cacgataacctggagtcatttgacaatctgtcgctcaacggcctagctacaggcgttagc
gcaggtttgtcaccacaaatcctcccagcatcaatcccagacctcgcgccaatgattcaa
atacccccgaccaatgagatggtggttgccaccacgcgactgcacgatatcgtgcgcact
gccctcactcgcgcgttgcaagatatcattcagccggtagttgacagatcggtgaccatt
gcagctatttcaacgagggaaatgatacgcaaggattttgctacggagcccgacgaaaac
agaatccgcacatctgctattaatatggtaaaagcaactgctggtagcctcgcactcgta
acgtccaaggagccactcaggggaaacttcaccaactacttgcgaaacctttccaacgac
ttgccgcagggcttgcctgaagggaccatcataatgtgcgtcaattcgaacttagacctc
gcctgtaacatcattgaaaaacaggccgaggagagggcggtgcctgagattgaagagatg
atcgaaaccgagttggacgctcgccgccgccatcgcgcgcagagaccgaacgaaccatac
gtcgatccttctcttagtcggccccatcctgttctcgacgtggtggatgcattggttcag
cacatgatcaagacttcacaaaattcggaagaatttgccctctttgctgctgagcaaatt
atccagcttatattcagccaggttgaagacaatcttgctctggagagtttggttcacgtt
cttgaaaccctgcgcaaaatctctggaccggggttgaacaatcgagtgacgacactgttc
cgacaacaacctggctcgagcttccttcgcctgccgctcctggctgccctgttgcgaaca
gacttgatcgactggagaaatgttgacgttgcgctggctaagacggtgcagcaacggaaa
gaaggttccctggaattcctggaacagatgattgacctgaccctcttggggactcggcca
ctggccctatacggcgacttcgtacgcaccctggatgtcgcatggactttggtccacgat
gatccggaatcgcctgtttctcagcggctattgacgaagctgtcaagccaaggtatttct
ctgagcgtggcagcggacaccgatatctttgcatcaacgagatcaaaatggaggatgttt
ttgatgaatgggttcatcttctatggcaaccccaatgcgcccgacgattccgcggtgctc
tttgcgcgacagaagcagccagaggtcttgctaaggaacaaagacgatttattcttctta
tcagggtcgccgtcgacgtctgtgttgacagccctgctgaccctcgtcctgagccatcat
catttgaagcgagttgaccccttcaatcaaagggttttccatcgtctgctatccgtcttg
ctccatgaagtgggcgcaatcgaaagtcaagtcgatgagcttgagcagcttgacatgctg
ctgcgaattgcctcccgactcgcggatctcagtccccgataccttccgggcttcgcctat
ggctggctgtcgcttatccaacacagagcatttctacctgttatcctgaaggagcgtgca
ggctggtcagcgtatacgacactcctacgcatgctcttcgaattcgttggggaacagctc
aaagctcctgagcccaccgccgtggcacgtgatacataccgtgcgacattaaaactgctc
gttgtcctgcaacatgatttcacagagtacatcgctgctcattccgaccagctacgcata
agcttgcctccccactgcaagcagcttatcaatgctattctcgccgcaaacccggcatct
caggatgctctgagtcctaatgcggatcaaagtaatgggttgaaggcgaaagagggtacc
gaagacgacactcctattttgctgagggagcacggtctcctgggcgtagtcgatcaggct
ctgcacactggtccatcggaagacggcttggctcacatgacgcgtgccatcatcgaatct
gacgcccgcgaaaccggatttgcgctcgtcagtatcaacgcgaatctatccgtcatcgaa
gcgatcatactccatattggcaaatacgctgtggggcgtttggcccaaggaggagagtct
ttcaacccatcttcgacggacgtcgcaattttgtcgctattgatgcatgagctggcgccg
gagccccgctattacctcgttgtcggcatggttaaccagctgaggttccctggcgatatg
acgagctacttcagtcgagttctgctggaaattttcggccgcgacttgaatgatcccgac
gacacagagatccggcagcagatcacgcgcgtgttgtgggaacgactgatcggtttctgg
ccacagccttggggcctcatgatcacggttctggagcttctgaagaacgaaaagtatgcg
ttcttcgacctaccatttgttaagtcgtcacccgagataatcgatcgtttccacgctgtt
cttcagcgtgcgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (37)   

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