KEGG   Variovorax sp. PMC12: C4F17_10975
Entry
C4F17_10975       CDS       T05380                                 
Name
(GenBank) oligoribonuclease
  KO
K13288  oligoribonuclease [EC:3.1.-.-]
Organism
vam  Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:vam00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vam03019]
    C4F17_10975
   03009 Ribosome biogenesis [BR:vam03009]
    C4F17_10975
Messenger RNA biogenesis [BR:vam03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     C4F17_10975
Ribosome biogenesis [BR:vam03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    C4F17_10975
SSDB
Motif
Pfam: RNase_T Rv2179c-like Ribosomal_L10 pP_pnuc_1
Other DBs
NCBI-ProteinID: AVQ81427
UniProt: A0A2P1V8B4
Position
1:complement(2369969..2370565)
AA seq 198 aa
MPESLDPTSPAAVPTLKKSDQNLVWLDCEMSGLDPEKERLLEIAVVVTGPDLTPRIDGPV
LVIHQSDAVLDGMDAWNKGTHGRSGLIDKVKASTLDEAAAEQQLLEFIARYIPRSGSPMC
GNTIGQDRRFLVKYMPKLEAYFHYRNLDVSTLKELAKRWKPTAYSSFKKQQAHTALADVH
ESIEELAHYRETFLRLAD
NT seq 597 nt   +upstreamnt  +downstreamnt
atgcccgaatcccttgacccgacgtccccggccgcagtgcccaccctcaagaaaagcgac
cagaacctggtctggctcgactgtgaaatgagcggcctcgaccccgagaaagagcgcctg
ctcgaaatcgcggtggtcgttaccggccccgacctcacgcctcgcatcgacggccccgtg
ctcgtcatccaccagagcgacgccgtgctcgacggcatggatgcctggaacaagggcacc
catggccgcagcggcctgatcgacaaggtcaaggcctcgacgctcgacgaagccgccgcc
gagcagcaattgctggaattcatcgccaggtacatcccgcgcagcggctcgcccatgtgc
ggcaacaccatcggccaggaccggcgcttcctggtcaagtacatgcccaagctcgaggcg
tatttccactaccgcaacctcgacgtcagcacgctgaaggaactggccaagcgctggaag
cccacggcctacagcagcttcaagaagcagcaggcgcacaccgccctggccgacgtgcac
gagtccatcgaggaactcgcgcactaccgcgaaaccttccttcgtcttgcggattga

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