KEGG   Variovorax sp. PMC12: C4F17_15065
Entry
C4F17_15065       CDS       T05380                                 
Name
(GenBank) type I restriction-modification system endonuclease
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
vam  Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:vam00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:vam02048]
    C4F17_15065
Enzymes [BR:vam01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     C4F17_15065
Prokaryotic defense system [BR:vam02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   C4F17_15065
SSDB
Motif
Pfam: ResIII EcoEI_R_C SWI2_SNF2 HSDR_N DEAD Helicase_C DUF4145 AAA_19 AAA_34 AAA_22 zf_Hakai Phage_Mu_Gp48 SNF2-rel_dom UvrD-helicase
Other DBs
NCBI-ProteinID: AVQ82173
UniProt: A0A2P1VAF7
Position
1:complement(3228543..3231953)
AA seq 1136 aa
MQGDKASNFGHLKAHDEQLVRLGMLAERYFADDPNTCLLKLRQLTELLAQLAASNVGVFT
SSEEKQVDLLRRLQDQGIIPREVGALFAQVRRSGNNANHSFGGDHRTALLSLRLTWQLGV
WFHRTFKDPAFKSGPFLPPVPPANESVELTTELNALRVELAQYRATHQDAAQVLDQAQAQ
IRRAEEDRAFWENMATEAESAKAALLQRMELLQAQAGAEPPQAIARLVAAANSAAAVIQI
SEDDTRKLIDEQLASAGWTVDSARLTFSKGARPQRGQNLAIAEWPTETGPADYALFIGLT
PVAIVEAKRKNIDVSAALQQAKRYSRGFRASPEVELPADNFGANAEFRIPFVFSTNGRPY
LRQLAEKSGVWFCDLRRPENLGHALDGWYTPEGLSALMERDEDRAHTELANAPFEYGFPL
RPYQQNAIRATEASIHEGQRAILLAMATGTGKTKTCIALIYRLLNAKRFRRILFLVDRSA
LGEQAANAFKDTRMERLQTFADIFGIKELDAPRPDADTAVHLATIQGMVQRVLYTAEGEL
PPPVDQYDCIVVDECHRGYLLDRELSDTELSFRGYDDYVSKYRRVLDHFDAVKVGLTATP
ALHTTQIFGPPVFTYGYREAVVDGWLVDYEPPIQVHTHLSSEGIAWKAGEEVKVYNTGRQ
QIDLFKAPDEIKLKVDDFNRKVITRPFNEVVCNYLAQELDPASRRKTLIFCVSDSHADMV
VDLLKQAFATQYGSVEDDAVIKITGAADRPLQLIRRYRNERLPNVAVTVDLLTTGIDVPE
ICNLVFLRQVNSRILFDQMLGRATRLCDFGGTDVKDAFRVFDAVRIFEAIGDMTAMQPVV
VNPKISFSQLAQELATLKDDAATALVRDQFLAKLQRKKRHLSDNDRQDFEAKAGMPVQAF
IQKLKAMSPTDVAAWFVQNPELGELLDRRGDGPEREMYVSEHADRFERADRGYGKAQKPD
DYLRAFGDFIRDQGNQIPALVTVLTRPRELTRAQLRELVLTLDRAGFTETNLASAWRELT
NQDIAARIVGYIRQAAIGDALVPYAERVDHALQNLLAHPPGGKPWSTPQRDWLKRIAAQT
KANVLVDRAALDDPDLIFKREGGGFNRLDKVFNGRLQPVLEAFNDALWSPPSSANR
NT seq 3411 nt   +upstreamnt  +downstreamnt
atgcagggcgataaggcatcgaattttggacacctcaaggcgcacgatgagcaactcgtg
cgcctcgggatgcttgctgagcgctactttgcggacgatccgaatacttgcctcctgaag
cttcgccaattgacggaattgctcgcacaactcgcagcttcgaacgtcggggttttcacc
tcttccgaagaaaagcaggtcgacctgcttcgccgtctgcaggaccagggcatcatcccg
cgagaggtcggggcgttgttcgcgcaggtccgtaggtcgggcaacaacgcgaaccacagt
tttggcggcgaccaccgcaccgcgttgctcagcctccggcttacgtggcaattaggcgtg
tggttccaccggacctttaaggatcccgccttcaagtccggcccgttcctgcctccagtg
ccgccggcgaacgaaagcgtcgaactcacaaccgaactcaacgcacttcgggttgagttg
gcccagtaccgagctacgcatcaggatgcggcccaggtgctcgatcaggcgcaggcacag
atcaggcgcgccgaagaagatcgcgcgttctgggagaacatggccacggaggccgaatcg
gcaaaagccgcactactccagcgtatggagttgcttcaggcccaagccggtgcggagcca
ccacaggccatcgcgagacttgtagcagccgcaaattcggcggcagcagtcatccagatc
agcgaagacgacacgcgcaagctcatcgacgaacaacttgccagcgcgggctggacggtc
gactcggcgcggctgacgttctccaaaggtgccaggccccaacgtggccagaacctcgct
atcgccgaatggcccaccgagacggggcctgccgactacgcgctgttcatcggcctcacg
ccggtcgccatcgtggaggccaagcgcaagaacatcgacgtctcggctgcattgcaacaa
gccaagcgctacagccgcggcttccgtgcatcacccgaggtggagcttcctgccgacaac
ttcggagccaacgccgagttccgtattccctttgtgttttccaccaacggtcgtccctac
ttgcggcagttagctgagaaaagcggcgtctggttctgtgacctgcggcgcccagaaaac
ctcggccatgcactagacggttggtacacgcccgaaggcctgagcgcgctgatggagcgg
gacgaagaccgcgcgcacaccgaactcgccaatgcgccattcgaatacggttttccgcta
cgcccctaccagcagaacgccatccgggcgaccgaggccagtattcacgagggccagcgt
gccatcttgctggccatggccactggcaccggcaagaccaagacctgcattgccctcatc
taccgcctgctcaatgccaagcgctttcgccgcatcttatttttggtcgaccgctcagcc
ctgggcgagcaggccgcgaatgccttcaaggacacgcggatggagcgtttgcagaccttc
gccgacattttcggcatcaaggaactggatgccccacggcccgacgccgacacggccgtc
catctggccacgatccagggcatggtgcaacgtgttctgtacaccgccgaaggtgagctt
ccacctcccgtcgaccagtacgactgcatcgtcgtcgacgaatgccatcgcggctacctg
cttgaccgtgagttgtcggacaccgaactcagtttccgtggctacgacgactacgtttcc
aaataccggcgcgtgctggaccacttcgacgctgtgaaggtcggcctcaccgccacgcct
gcgctgcacaccactcagatcttcggaccgccggtgttcacttacgggtaccgtgaggcc
gtcgtcgatggctggctggtggactacgaaccgcccatccaggtgcacacccacttgtcc
agcgaaggcatcgcctggaaggctggcgaggaagtcaaggtttacaacacgggccgccag
cagatcgacctgttcaaggcgccggacgagatcaagctcaaggtcgacgatttcaaccgc
aaggtcatcacacgaccgttcaacgaggttgtttgcaactatttggcgcaggagctggac
cccgcgtcgcgccgcaagacgctgatcttctgcgtcagcgacagtcatgccgacatggtg
gtggacttgctcaagcaggctttcgccacccagtacggttctgtggaagatgacgccgtc
atcaagatcaccggcgcggccgacaggccgctgcagttgatccgccgctacaggaacgaa
cgcctccccaacgttgcggtgacggtggacctgctgaccaccggcattgacgtgcccgag
atctgcaacctggtcttcctgcgacaggtgaatagccgcatcctgttcgatcagatgctg
ggccgcgctacgcggctgtgcgacttcggcggtaccgacgtaaaggacgcgttccgcgtg
ttcgacgccgtgcgcatcttcgaggctatcggcgacatgacggccatgcagcccgtggtc
gtgaatccgaaaatcagcttcagccaactggcccaggagctggcaacgctcaaggacgat
gccgccaccgccctggtgcgtgaccagttcctggctaagctgcagcgcaagaagcgtcac
ctgtctgacaacgaccgacaagacttcgaagccaaagccggcatgcccgtgcaggccttc
atccagaaactgaaggctatgtccccgaccgatgtggccgcatggttcgttcaaaacccg
gagctgggcgaactgctggaccgccgcggcgatggccccgaacgcgagatgtatgtgtca
gagcatgccgaccgctttgaacgtgccgatcgcggctacggcaaggcccagaagccagac
gactacctccgcgcgttcggcgatttcatccgggaccaaggcaaccagattccggccttg
gtgaccgtgctcacccgcccgcgcgagctgacccgcgcccagctgcgcgagctggtgctg
accctggaccgtgccggcttcaccgaaaccaatctggcctcggcttggcgcgagctgacc
aatcaggacatcgccgcgcgcatcgtcggctatatccgccaggccgccatcggcgacgcg
ctggtaccctacgccgagcgggtggaccatgcgttgcaaaacctgctggcgcacccgccc
ggcggcaagccttggagcacaccgcagcgcgactggctcaaacgcattgcggcgcagacc
aaggccaacgtgctggtagaccgcgccgctctcgacgaccccgacctcatcttcaagcgc
gaaggcggcggcttcaaccgcctcgacaaagtcttcaatggccggctccagcccgtgctg
gaggccttcaacgacgcgctgtggtccccaccatcatcggccaaccgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (14)   
   Pfam (14)   
All databases (23)   

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