KEGG   Variovorax sp. PMC12: C4F17_23950Help
Entry
C4F17_23950       CDS       T05380                                 

Definition
(GenBank) amidase
  KO
K02433  aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
Organism
vam  Variovorax sp. PMC12
Pathway
vam00970  Aminoacyl-tRNA biosynthesis
vam01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:vam00001]
 09120 Genetic Information Processing
  09122 Translation
   00970 Aminoacyl-tRNA biosynthesis
    C4F17_23950
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03029 Mitochondrial biogenesis [BR:vam03029]
    C4F17_23950
Enzymes [BR:vam01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.5  Carbon-nitrogen ligases with glutamine as amido-N-donor
    6.3.5.6  asparaginyl-tRNA synthase (glutamine-hydrolysing)
     C4F17_23950
    6.3.5.7  glutaminyl-tRNA synthase (glutamine-hydrolysing)
     C4F17_23950
Mitochondrial biogenesis [BR:vam03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial transcription and translation factors
   Other mitochondrial DNA transcription and translation factors
    C4F17_23950
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: Amidase
Motif
Other DBs
NCBI-ProteinID: AVQ83760
UniProt: A0A2P1VF22
Position
1:complement(5124171..5125577)
Genome map
AA seq 468 aa AA seqDB search
MGLSDLTAQELAAAYRDRKLSPVEVTQAVIAHIERWEPHLQATWLFRPEAALEQARASEA
RWQRGDARGPLDGVPATIKENIATRGDPMPAGTAAVDLKPAAADAPPAARLKEAGAVIVS
KTTMPDYGMLSSGLSSFHTLARNPWDLRLTPGGSSAGAGAAAAAGYGPLHLGTDIGGSLR
LPASWCGIFTLKPSLGRIPIDPPYMGRAAGPMTRTVGDAALMMQALARPDARDSMSLPAQ
DIDWSAFDVSPDHLRGLRIGLLLDAGCGLAVEPEIQAAVEQAARLLEKAGAVIEPMQPFM
SQAMLDGMDHLWRMRSLVDMKGLRADQRAKVLPYIREWAESAAEFSGEHVFRSFSQFHAT
RVAAVSACARFDYVISPVSPNMPAAAEAPSPTNDPLRALEHIGFTVPFNMSEQPASSVNC
GYSASGLPIGLQIAGQRFDDLGVLRVSRAFEQIRELQRPWPEGPRAGS
NT seq 1407 nt NT seq  +upstreamnt  +downstreamnt
gtggggctgagcgacctgaccgcgcaggagcttgccgcggcctaccgcgaccgcaagctc
tcgccggtggaggtcacgcaggccgtcattgcgcacatcgagcgctgggagccgcacctg
caggccacctggctcttcaggcccgaggccgcgctcgagcaggcgcgggcatcggaggcg
cgctggcagcgcggcgacgcgcgcggtccgctcgacggcgtgccggcgaccatcaaggaa
aacatcgccacgcgcggcgacccgatgccggccggcaccgcggccgtcgacctgaagccc
gccgccgccgacgcgccaccggccgcgcgcctgaaggaagcgggcgcggtgatcgtgagc
aagaccaccatgccggactacggcatgctgtcttcgggcctctcgagcttccacacgctg
gcgcgcaatccgtgggacctgcggctcacgccgggcggctccagcgcgggcgcgggtgcc
gcggctgctgccggctacggccctctgcacctgggcaccgacatcggcggctcgctgcgc
ctgcccgcgagctggtgcggcatcttcacgctcaagcccagcctgggccgcattccgatc
gacccaccctacatgggccgcgcggccggcccgatgacgcgcaccgtgggcgacgccgcg
ctgatgatgcaggcgctggccaggcccgacgcacgcgacagcatgagtttgccggcgcag
gacatcgactggtccgccttcgacgtgtcgcccgaccatctgcgcggactgcgcatcggg
ctgctgctcgacgcgggctgcggactggcggtggagcccgagatccaggcggcggtcgag
caggccgcacgcctgctggaaaaggcaggcgccgtcatcgaaccgatgcagcccttcatg
tcgcaggcgatgctcgatggcatggaccacctgtggcgcatgcgctcgctggtggacatg
aaggggctgcgcgccgaccagcgcgcgaaggtgctgccctatatccgcgaatgggccgag
agcgcggcggagttcagcggcgagcatgtgttccgcagcttcagccagttccacgcaacg
cgcgtggccgccgtcagcgcatgcgcgcgcttcgactacgtgatctcgccggtgtcgccg
aacatgccggcggccgcggaagcgccctcgcccaccaacgatccgctgcgtgccctggag
cacatcggcttcacggtgccgttcaacatgtcggagcagccggcttcgtcggtgaactgc
ggctactcggcctcgggcttgccgatcggcctgcaaatcgcggggcagcgcttcgacgat
ctcggcgtgcttcgcgtttcgcgcgccttcgagcagatccgcgaattgcagcggccctgg
cccgaggggccgcgggcaggcagctga

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