KEGG   Variovorax sp. PMC12: C4F17_25175Help
Entry
C4F17_25175       CDS       T05380                                 

Definition
(GenBank) methionine--tRNA ligase
  KO
K01874  methionyl-tRNA synthetase [EC:6.1.1.10]
Organism
vam  Variovorax sp. PMC12
Pathway
vam00450  Selenocompound metabolism
vam00970  Aminoacyl-tRNA biosynthesis
vam01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:vam00001]
 09100 Metabolism
  09106 Metabolism of other amino acids
   00450 Selenocompound metabolism
    C4F17_25175
 09120 Genetic Information Processing
  09122 Translation
   00970 Aminoacyl-tRNA biosynthesis
    C4F17_25175
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01007 Amino acid related enzymes [BR:vam01007]
    C4F17_25175
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:vam03016]
    C4F17_25175
Enzymes [BR:vam01000]
 6. Ligases
  6.1  Forming carbon-oxygen bonds
   6.1.1  Ligases forming aminoacyl-tRNA and related compounds
    6.1.1.10  methionine---tRNA ligase
     C4F17_25175
Amino acid related enzymes [BR:vam01007]
 Aminoacyl-tRNA synthetase
  Class I (U)
   C4F17_25175
Transfer RNA biogenesis [BR:vam03016]
 Eukaryotic type
  Aminoacyl-tRNA synthetases (AARSs)
   Multi-aminoacyl-tRNA synthetase complex (MSC)
    C4F17_25175
 Prokaryotic type
   Other AARSs
    C4F17_25175
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: tRNA-synt_1g tRNA_bind tRNA-synt_1 tRNA-synt_1f tRNA-synt_1e Anticodon_1
Motif
Other DBs
NCBI-ProteinID: AVQ83974
UniProt: A0A2P1VFP3
Position
1:complement(5362932..5365031)
Genome map
AA seq 699 aa AA seqDB search
MSAPRKLFVTTALPYANGKFHIGHMMEYIQADIWVRNQRMNGAEVNFVCADDAHGAAITI
AADKAGVTPQAFVAEIAAGRKPYLDGYYISFDNWHSTDAPENHQLAQDIYRDLRANGLIS
TKSVEQFYDPEKGMFLADRFIKGECPNCHSKDQYGDNCEVCGAVYAPTELINPYSALSGA
KPELRSSEHFFFKLSDPRCEAYLKEWTAAPGHVQSEVQNKIREWLYKDDEGKGGLGDWDI
SRDAPYFGIEIPDAPGKYFYVWLDAPVGYLASLKNLLDKRCIELGGDGISYTEYMADPDL
EQVHFIGKDIITFHTLFWPAMLHFSGRKAPDAVYVHGHLTVSGEKMSKSRGTGIDPLKYL
SIGLDPEWLRYYIAAKLNGRNEDIDFNPEDFVARVNSDLVGKYINIASRAAGFIGKRFGG
RLGEVSADGDALLFTLRDAATQIHTLYDGRDYARALREVMALADKVNEYVDQNKPWELAK
KEGAEARLHDVCTVCIEAFRLLTLYLKPVLPALALNVEAFLKTSPLVWADAAQSLPAGHA
IGDYKHLMQRADPKQVDKLFDAPEAPAAAPAAATEAQELPGGEAIAPAITIDDFAKIDLR
IAKIVACEKVEGSTKLLRLTLDAGEGKTRNVFSGIASAYQPEQLVGKLTVLVANLAPRKM
KFGISEGMVLAASHGDEKAHPGIHVLEPWPGATPGMRVR
NT seq 2100 nt NT seq  +upstreamnt  +downstreamnt
atgtccgccccgcgcaagctcttcgtcaccaccgccctgccgtacgccaacggcaagttc
catatcggccacatgatggaatacatccaggccgacatctgggtgcggaaccagcggatg
aacggcgccgaggtcaacttcgtctgcgccgacgacgcgcacggcgcggccatcaccatc
gcggccgacaaggccggcgtgacgccgcaggccttcgtggccgagattgcggccgggcgc
aagccgtatctcgacggctactacatctccttcgacaactggcactcgaccgacgcgccc
gagaaccaccagctcgcgcaggacatctaccgcgacctgcgggccaacggcctgatcagc
accaagagcgtcgagcagttctacgaccccgaaaagggcatgttcctggccgaccgcttc
atcaagggcgagtgccccaactgccattcgaaggaccagtacggcgacaactgcgaggtg
tgcggcgccgtgtacgcgcccaccgagctgatcaatccctactcggccctgtcgggcgcc
aagcccgagctgcgcagctcggagcacttcttcttcaagctctccgacccgcgctgcgag
gcctacctgaaggaatggaccgccgcccccggccacgtgcagtccgaggtgcagaacaag
atccgcgaatggctctacaaggacgacgagggcaagggcggcctcggcgactgggacatc
agccgcgacgcgccgtacttcggcatcgagatccccgatgcgccgggcaagtacttctac
gtgtggctcgacgcccccgtgggctacctggcgtcgctgaagaacctgctggacaagcgc
tgcatcgaactcggcggcgacggcatctcgtacaccgagtacatggccgaccccgacctc
gagcaggtgcacttcatcggcaaggacatcatcaccttccacacgctgttctggcccgcg
atgctgcacttcagcggccgcaaggcgcccgacgccgtgtacgtgcacggccacctcacg
gtgagcggcgagaagatgagcaagagccgcggcaccggcatcgacccgctcaagtacctg
tcgatcgggctcgaccccgaatggctgcgctactacatcgccgccaagctcaacggccgc
aacgaagacatcgacttcaaccccgaggacttcgtggcgcgcgtcaacagcgacctcgtg
ggcaagtacatcaacatcgccagccgcgcggcgggcttcatcggcaagcgcttcggcggc
aggctgggcgaggtgtcggcagacggcgacgcgctgctgttcacgctgcgcgacgcggcc
acccagatccacacgttgtacgacggccgcgactacgcccgcgccctgcgcgaggtgatg
gcgctggccgacaaggtgaacgagtacgtcgaccagaacaagccctgggagctggccaag
aaggaaggcgccgaggcgcgcctgcacgacgtgtgcaccgtgtgcatcgaggccttccgc
ctgctcacgctgtacctgaagccggtgctgccggcgctggcgctgaacgtcgaggccttc
ctgaagacctcgccgctggtctgggccgacgcggcgcagtctctgcccgcgggccacgcc
atcggcgactacaagcacctgatgcagcgcgccgaccccaagcaggtcgacaagctgttc
gatgcgcccgaggcacccgctgcggcacccgccgccgcgacggaagcccaggagctgccc
ggcggcgaagccatcgcgcccgccatcaccatcgacgacttcgcgaagatcgacctgcgc
atcgcgaagatcgtggcctgcgagaaggtcgaaggctcgaccaagctgctgcgcctgacg
ctcgacgcgggcgaaggcaagacccgcaacgtgttcagcggcatcgcctcggcctaccag
cccgagcagctagtgggcaagctcacggtgctggtcgccaacctcgcgccgcgcaagatg
aagttcggcatcagcgaaggcatggtgctggccgcgagccacggcgacgaaaaggcccac
cccggcatccacgtgctggagccgtggccgggcgcgacgccgggcatgcgcgtgcgctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (29)   

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