KEGG   Variovorax sp. PMC12: C4F17_27305
Entry
C4F17_27305       CDS       T05380                                 
Symbol
tssC
Name
(GenBank) type VI secretion system contractile sheath large subunit
  KO
K11900  type VI secretion system protein ImpC
Organism
vam  Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:vam00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vam02044]
    C4F17_27305 (tssC)
Secretion system [BR:vam02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   C4F17_27305 (tssC)
SSDB
Motif
Pfam: VipB VipB_2
Other DBs
NCBI-ProteinID: AVQ84845
UniProt: A0A2P1VI58
Position
1:complement(5813339..5814838)
AA seq 499 aa
MANKSKAAEAGSAGTTVTTSDMSLLDKIVYEGKMTTEPSQGAYAKKLIGQLASQILDEGM
KTSPDKGVVTLINERVAEIDRLLTDQLNAILHAPEFQALEGSWRGLRDMVFGTETGSNLK
LRLLNVSKKDLLKDLETAVDHDTSVLFKKIYEEEYGTYGGHPYSLLIGDYYFGRHPQDIA
LLERVSRVAAAAHAPFIAAAAPALFDFKSFTELGIPRDLSKTFESAELASWRSFRESEDS
RYVSLVLPSYAARLPYGAKTNPVENFNYEEDVDGSDHGKYLWANAAYQLGLRITQAHSLY
GWTTAIRGVEGGGKVDGLVAHAYKTDEGDIALKPPTEVTITDRREKELSDLGFIAIVNSK
GSNTAAFFGGQTVNKPKVYDKDAANANAAVSARLPYILAASRFAHYLKVIVRDKIGSFQT
QADMQKHLNNWVANYVLVSPSAPQAMKAKYPLSQARVDVTEVPGKPGSYRAIAFLKPHFQ
LEELSASIRLVADLPAAAA
NT seq 1500 nt   +upstreamnt  +downstreamnt
atggccaacaaatccaaagccgcagaagccggcagcgcaggtaccaccgtcacgaccagt
gacatgagcctgctcgacaagatcgtctacgaaggcaagatgacgaccgagccttcgcag
ggcgcctacgcgaagaagctgatcggtcagctcgcctcgcagatcctcgacgaaggcatg
aagaccagccccgacaagggcgtggtcaccctgatcaacgagcgcgtcgccgaaatcgac
cgcctgctgaccgaccagctcaacgcgatcctgcacgcccccgagttccaggccctcgaa
ggctcctggcgcggcctgcgcgacatggtgttcggcaccgagaccggcagcaacctgaag
ctgcgcctgctcaacgtgagcaagaaggacctgctcaaggacctggagaccgccgtcgac
cacgacaccagcgtgctcttcaagaagatctacgaagaggaatacggcacctacggcggc
cacccctactcgctgctgatcggcgactactacttcggccgccacccgcaggacatcgcc
ctgctggagcgcgtctcccgcgtggccgcagccgcgcacgcccccttcatcgccgccgcc
gcaccggcgctgttcgacttcaagtcgttcaccgaactcggcattccgcgcgacctgtcc
aagaccttcgagagcgccgagctcgcctcgtggcgcagcttccgcgaatcggaagactcg
cgctacgtgtcgctggtgctgcccagctacgccgcccgcctgccctacggcgccaagacc
aaccccgtcgagaacttcaactacgaagaagacgtggacggctccgaccacggcaagtac
ctgtgggccaacgcggcctaccagttgggccttcgcatcacccaggcgcactcgctgtac
ggctggaccacggccatccgcggcgtcgagggcggcggcaaggtcgacggcctggtggcc
catgcctacaagacggacgaaggcgacatcgcactgaagccgccgacggaagtgaccatc
accgaccgccgcgaaaaggaactgagcgacctgggcttcatcgcgatcgtcaattccaag
ggttcgaacaccgccgccttcttcggcggccagaccgtgaacaagcccaaggtgtacgac
aaggacgcggccaacgccaacgcggccgtctcggcgcgcctgccctacatcctggccgcc
tcgcgtttcgcgcattacctgaaggtgatcgtgcgcgacaagatcggcagcttccagacg
caggccgacatgcagaagcacctgaacaactgggtggccaactacgtgctggtgagcccc
tcggcgccgcaggccatgaaggccaagtacccgctgagccaggcccgcgttgacgtgacc
gaagtgccgggcaagccgggctcgtaccgcgccatcgccttcctgaagccgcacttccag
ctcgaggaactctcggcctcgatccgcctggtggccgacctgccggccgcggccgcctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (9)   

Download RDF
DBGET integrated database retrieval system