KEGG   Variovorax sp. PMC12: C4F17_28325
Entry
C4F17_28325       CDS       T05380                                 
Name
(GenBank) multidrug efflux RND transporter permease subunit
  KO
K18146  multidrug efflux pump
Organism
vam  Variovorax sp. PMC12
Pathway
vam01501  beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:vam00001]
 09160 Human Diseases
  09175 Drug resistance: antimicrobial
   01501 beta-Lactam resistance
    C4F17_28325
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:vam02000]
    C4F17_28325
   01504 Antimicrobial resistance genes [BR:vam01504]
    C4F17_28325
Transporters [BR:vam02000]
 Other transporters
  Electrochemical potential-driven transporters [TC:2]
   C4F17_28325
Antimicrobial resistance genes [BR:vam01504]
 Gene sets
  Multipdrug resistance modules
   Multidrug resistance, efflux pump AdeABC [MD:M00649]
    C4F17_28325
SSDB
Motif
Pfam: ACR_tran MMPL SecD_SecF
Other DBs
NCBI-ProteinID: AVQ85749
UniProt: A0A2P1VKQ0
Position
2:complement(180591..183734)
AA seq 1047 aa
MPQFFIQRPVFAWVVALFIILFGVIAIPMLPIARYPAVAPPTVSITATYPGASAQTMNDG
VVSLIERELSSVKNLLYFESSADASGSASIVATFKPGTDPAMAQVDVQNKLKAIEPRLPQ
AVRQNGLAVESAASGFLMIIGLSSKDGRFSETALSDYMARNIVEELRRIQGVGKVQMFGA
EQALRIWVDPAKLISYGLSMNDLSAAVIQQNAQIAPGAIGASPSLPGQRVTVPLTVQGQL
STPEQFAAIVLRASADGSKVTMGDVARVELGAQSYGFINRENGKVATAAAVQLSPGANAV
RTAQGVRDRLKELRRTMPSGMDYSVPFDTAPFVKISIEKVIHTLIEAMALVFLVMFLFLQ
NIRYTLIPAIVAPIALLGTFAVMLVSGFSVNVLTMFGMVLAIGIIVDDAIVVVENVERIM
AKEGLAPREATMKAMREITGAVVGITLVLTAVFIPMAFASGSVGVIYQQFALSMAVAILF
SAFLALTLTPALCATLLKPVAQGHHEKRGFFGGFNRRFDAMNARYASRVGQIAARAGRVM
LVFVALCVLLVLAFRQLPSAFLPEEDQGYFMTVVQLPAEATMERTLDVVKKFEAHTASRP
SIQSNMTVVGFGFSGSGSNAAMAFTMLSDWDQRHGATASGEVALAQLAMAGTTEGTVMSL
MPPAIDELGNSSGFALRLQDRANQGHAALKSAEAKLLALAAQSKVVTGVYPDGLPQGTSI
RLDVDRQKAEALGVSFSNISETLSAAMGSAYVNDFPNAGRMQQVVIQADAPARMQIDDVL
RLHVRNSSAGMVALKEVVTPVWTDTPLQLVRYQGFPATRISGNAAPGASSGAAMAEMERL
ARQLPAGFALEWTGQSLQERQSAAQAPMLMALSMLVVFLVLAALYESWAIPLSVMLVVPL
GLLGAVAAVLLRGMPNDVFFKVGMITVIGLSAKNAILIVEFAKQLREEGKGLIESAVEAA
RLRLRPILMTSLAFGMGVVPLIVSSGASAETQRAIGTGVFGGIVTATALAIFFVPAFFVF
VIGLQERAAASRATRRPHLEHGNEQGG
NT seq 3144 nt   +upstreamnt  +downstreamnt
atgccgcagttcttcatccaacgcccggtcttcgcctgggtcgtcgccctgttcatcatc
ctgttcggggtcattgcgatcccgatgctgccgattgcccgctatcccgccgtggcgcct
cccaccgtcagcatcaccgcgacttacccgggggcgtcggcgcagaccatgaacgacggg
gtcgtcagcctcatcgagcgagagctgtccagcgtcaagaacctgctctacttcgagtcc
tccgccgacgcctccgggtcggcctccatcgtggccacgttcaagccgggcacggatcct
gccatggcccaggtcgacgtgcagaacaagctcaaggccatcgagccgcggctgccgcag
gccgtgcgccagaatggcctggcggtggaatccgccgcatcgggcttcctgatgatcatc
gggctgagctcgaaggacgggcgcttttcagaaacggcgttgagcgactacatggcccgc
aacatcgtcgaggaactgcgccgcatccagggcgtgggcaaagtgcagatgtttggcgcc
gagcaggccctgcgcatctgggtggaccctgccaagctgatttcgtacggcctgtcgatg
aacgacctgtcggctgcagtcatccagcagaacgcgcagatcgcgccgggcgccatcggc
gcttcgccatcgctgccagggcagcgcgtgaccgtgccgctgacggtgcagggccagctg
agcacgcccgagcagttcgcggcgatcgtgctgcgcgccagcgccgacggctccaaggtg
acgatgggcgacgtggcacgggtcgaactgggtgcgcagtcctatggcttcatcaaccgg
gagaacgggaaggtcgccacagcggcggccgtgcagctgtctccgggcgccaatgccgtg
cgcaccgcgcaaggcgtgcgcgacaggctcaaggagctcaggcgcaccatgccgtcgggc
atggactactcggtcccgttcgacaccgcgcccttcgtgaagatctccatcgagaaggtg
atccacaccttgatcgaagccatggcgctggtgttccttgtgatgttcctgttcctgcag
aacatccgctatacgctgatcccggccatcgtggcgccgatcgccttgctcggaaccttc
gccgtgatgctggtgtcggggttctcggtcaacgtgctcaccatgttcggcatggtgctg
gccatcggcatcatcgtcgacgacgcgatcgtcgtcgtggagaacgtcgagcgcatcatg
gcgaaggaaggcctcgcgccacgcgaagcgacgatgaaagccatgcgggagatcaccggt
gcggtcgtcggcatcacgctggtgctgacggcggtgttcattcccatggccttcgccagc
ggctccgtgggcgtgatctaccagcagttcgcgctgtcgatggccgtggcgatcctgttc
tccgccttcctggcgctgacgctcacgcccgcgctgtgcgcgacgctgctgaagccggtg
gcgcagggacaccacgagaagcggggtttcttcggcgggttcaaccggcgcttcgatgcc
atgaatgcgcgctacgcctcgcgcgtcggccagatagccgcgcgcgccggtcgcgtcatg
ctggtgttcgtggcgctctgtgtcctgttggtcctcgcgttccggcaactgccctcggcc
ttcctgccggaagaggaccagggctacttcatgacggtggtgcagttgcccgccgaggcc
accatggagcgcacgctggacgtcgtcaagaagttcgaggcgcacacggcgagccgccct
tcgatccagtccaacatgaccgttgtcggctttggcttctccggctcgggttcgaacgcg
gccatggccttcaccatgctcagcgattgggaccagcgccacggcgcgaccgccagtggc
gaggtggctctggcgcagctggccatggcgggaaccaccgaggggaccgtcatgagcctc
atgccgcccgcgatcgacgaattgggcaacagttcgggcttcgccctgcggctgcaggac
cgtgccaatcagggccatgccgcgctcaagtccgccgaggccaagctgcttgcgctggcc
gctcaaagcaaggtcgtgaccggcgtctaccctgatgggctgccgcagggcaccagcatc
cgtctggatgtcgaccgccagaaagccgaagcgttgggcgtgtccttctccaacatcagc
gaaacgctgtccgccgcgatgggctcggcctacgtgaacgactttcccaatgccgggcga
atgcagcaggtcgtcatccaggccgatgcgcccgcacgcatgcagatcgacgacgtgctg
cgtctgcacgtgcgcaacagcagcgcaggcatggtggcgttgaaggaggtggtcacgcct
gtgtggacggacacgccgctgcagctggtgcgctaccagggtttccccgccacgcgcatt
tcaggcaacgcggcaccgggtgcttccagcggagcggcgatggcggagatggagcggctg
gctcggcagctgccggccggcttcgccctcgaatggacaggccagtcgttgcaggagcgg
cagtccgccgcccaggcaccgatgctgatggcgctgtccatgctggtggtgttcctcgtg
ctggcggcgctttacgagagctgggccatcccgctgtctgtgatgctggtcgtccccttg
ggcctgctgggcgcggtggcggccgtcctgctgcgcggcatgcccaatgacgtgttcttc
aaggtcgggatgatcaccgtcatcggcttgtcggcaaagaatgcaatcctgatcgtggag
ttcgccaagcagttgcgcgaggagggcaaggggctgatcgaatcggcggtcgaggcggcg
cgccttcggctgcgccccatcctgatgacatcgctcgctttcggcatgggagtggtgccg
ctgatcgtctcctcgggcgccagcgccgagacacagcgtgccatcggcaccggtgtgttc
ggcgggatcgtgacggccaccgccctggccatcttcttcgtgcccgccttcttcgtgttc
gtgatcgggttgcaggagcgcgcggcggcttcgcgtgccacccgccgcccgcatctcgag
catggcaatgagcagggggggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (1)   
   KEGG MODULE (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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