KEGG   Vibrio anguillarum 775: VAA_01079
Entry
VAA_01079         CDS       T01536                                 
Name
(GenBank) NAD-dependent DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
van  Vibrio anguillarum 775
Pathway
van03030  DNA replication
van03410  Base excision repair
van03420  Nucleotide excision repair
van03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:van00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    VAA_01079
   03410 Base excision repair
    VAA_01079
   03420 Nucleotide excision repair
    VAA_01079
   03430 Mismatch repair
    VAA_01079
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:van03032]
    VAA_01079
   03400 DNA repair and recombination proteins [BR:van03400]
    VAA_01079
Enzymes [BR:van01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     VAA_01079
DNA replication proteins [BR:van03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     VAA_01079
DNA repair and recombination proteins [BR:van03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     VAA_01079
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     VAA_01079
   MMR (mismatch excision repair)
    DNA ligase
     VAA_01079
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      VAA_01079
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD HHH PTCB-BRCT 5_3_exonuc DZR_2
Other DBs
NCBI-ProteinID: AEH33700
Position
I:complement(2291212..2293227)
AA seq 671 aa
MMQTIEHKLSQLRETLHYHAVRYYVEDNPEIPDAEYDRLMRELLELESQYPELVTADSPS
LRVGGKPLEGFAQVTHEIPMLSLDNVFDENELDAFHKRMQDRIPSAHFNAFCCEPKLDGL
AVSLLYENGVLVQAATRGDGAVGENITENVRTISAIPLKLQGKGWPVRLEVRGEVFMPKA
GFERLNQQALKKGEKTFVNPRNAAAGSLRQLDSKITAQRPLNFYAYSVGVIEGAELASSH
YQRFLQLKGWGLPMCPETRLVSSMDEVKEYYQSILTRRAQLAYEIDGVVIKVDDIELQQK
LGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH
NADEIERLGVKIGDSVIIRRAGDVIPQIVSVLLDRRSDTVVDIVFPQYCPVCNSDIERVE
GEAVARCTGGLVCQAQRKEALKHFVSRKALDVDGLGEKVIEQLVDKEMVSTPADLFRLKA
GQLTVLERMGPKSAQNIVNALNAAKMTTLPRFLYSLGIREVGEATAANLALHFGSLDKIR
QATHEELLEVQDVGVIVASHITSFFEQDKNQRVINELIELGIQWPNIEKPSQDAILPLLG
KVVVLTGSLSKLSRSDAKAALQELGAKVTGSVSKNTDILFAGEAAGSKLVKAQELGIEIR
SEQDLLELMKS
NT seq 2016 nt   +upstreamnt  +downstreamnt
atgatgcaaacaatagaacacaaattaagccaacttcgtgagacgctgcattatcatgct
gtacgttattatgtagaagataaccctgaaattcctgacgctgagtatgatcgtttgatg
cgtgagctgcttgagttggaatcgcagtatccggagttagtcacagcggattcacccagc
ttgcgtgttggaggtaagcctttagagggttttgcccaggtgactcatgaaattccaatg
ctctctttagataatgtgtttgatgagaatgagcttgatgcctttcacaagcggatgcaa
gaccggataccgagtgcccactttaacgctttttgctgcgaacctaagcttgatggttta
gccgtgagtttgctttacgaaaatggtgtgttagtacaagccgccacgcgtggggatggc
gcggtcggtgaaaacattacggaaaacgtgcgaacgatcagtgctattccactgaagtta
cagggaaaagggtggcccgttcgtttagaagttcgtggtgaagtgttcatgcctaaagcc
ggttttgagcgattgaaccaacaagcactcaaaaaaggtgaaaaaacctttgttaaccca
agaaatgcagccgcagggagcttgagacagctcgactcaaaaatcacagctcaaaggccg
ttgaatttttatgcttacagtgttggtgtgattgaaggcgctgagttagcaagcagtcat
tatcagcgctttttgcagttaaaagggtgggggctgccgatgtgccctgaaacacgtcta
gtctcttcaatggatgaagtgaaagagtactaccaaagtatcttaactcgtcgcgctcaa
ctcgcgtatgagattgatggcgtggtgattaaagttgatgatattgaactgcaacaaaag
ctcggttttgtcgcgcgggcgcctcgctgggcgattgcttataaatttcccgcccaagaa
gaaataacgctcctgaacgatgttgaatttcaagtgggccgtaccggggctattacacct
gttgcgaagttagaacctgtatttgtggggggagtcaccgtcagcaatgccacattacac
aacgctgatgaaattgagcgcctaggcgtgaaaattggtgatagcgttattattcgtcga
gcaggcgatgttatcccacagattgtttctgtgttgttagacagacgctctgatacagtg
gtcgatattgttttcccgcagtactgcccggtgtgcaactctgacattgagcgtgttgaa
ggtgaagctgtcgcccgttgtacaggggggttagtgtgtcaagctcagcgcaaagaagca
ttaaagcactttgtctctcgcaaagcgttagacgtggatggtttaggcgaaaaagtgatt
gagcagcttgttgataaagagatggtgagcacgcccgcggacctcttccgtctaaaagca
gggcagctaacggtgttagagcgtatgggaccaaaatcagcacaaaatatcgttaatgca
ctgaatgccgccaaaatgaccacattaccccgttttttgtattcattgggcatacgtgaa
gtcggggaagcgacggcggcgaatcttgcgctccatttcgggtcattagacaaaattcgc
caagcgacccatgaagaactacttgaagttcaagatgttggagttatcgttgcgagtcat
atcacatctttttttgagcaagataaaaaccaacgggtgattaatgaattgatcgaactt
ggtatccagtggcctaatatcgaaaagccgagccaagatgcgattctccctttacttggt
aaagtggtggttttgacggggagcttgtcgaaactctctagaagtgatgcgaaagcggcg
ctacaagagcttggcgcaaaagtaacgggaagcgtctctaaaaacaccgatatactattt
gccggagaagcggccggttcaaaattagtaaaagcgcaagaactagggatcgaaattcgc
agcgaacaagatttgcttgagttaatgaaaagctaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (29)   

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