KEGG   Vagococcus zengguangii: FA707_06895
Entry
FA707_06895       CDS       T05965                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
vao  Vagococcus zengguangii
Pathway
vao03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vao00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FA707_06895
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vao03019]
    FA707_06895
   03009 Ribosome biogenesis [BR:vao03009]
    FA707_06895
Messenger RNA biogenesis [BR:vao03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     FA707_06895
Ribosome biogenesis [BR:vao03009]
 Prokaryotic type
  rRNA helicases
   FA707_06895
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Helicase_RecD AAA_22 ERCC3_RAD25_C CMS1
Other DBs
NCBI-ProteinID: QCI86708
UniProt: A0A4D7CRJ0
Position
complement(1461820..1463433)
AA seq 537 aa
MKFKDLGLAPDILSSIEKAGFEEATPIQGGTIPLALAGRDVIGQAQTGTGKTAAFGLPML
QKIDTSKKAIQGIVVAPTRELAIQTQEELYRLGRDKKIRVQVVYGGADIGRQIRALKDAP
HIIVGTPGRLIDHINRRTLKLNNIETLVLDEADEMLNMGFLEDIETIISSTPSERQTLLF
SATMPNSIKNIGVKFMKNPEHVSIKAKEMTANLIDQYYVRCKDFEKFDIMTRLFDVQSPD
LTIVFARTKRRVDELARGLESRGYKAEGIHGDLTQQKRMSVLRAFKSNTIDVLVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMSITFVTPNEMDYLHVIEDLTKK
RMTPLRPPTEQEALQGQVNAAIQTIEADLANNGLEQYLKTAEALLEKYSAEDLVALLVKS
VAKEDSSAVPVKITPERPLPSNRRKGKGGGGKGRGNGRGNYNRGGNRSGNGGGRRNDRGG
EQRGGERGEQRGERRDRGERRDRKEGGEFRGNNKRKDAGRKRPEKSKRDFVIRTANK
NT seq 1614 nt   +upstreamnt  +downstreamnt
ttgaaattcaaagatttaggattagcaccagacattttgagctcaatcgaaaaagctggt
tttgaagaagcaacacccatccaaggcggaactattccattagccttagcaggtagagat
gttattggtcaagcacaaacagggactggtaaaacagcagcgtttggtttaccaatgtta
caaaaaattgatacaagtaaaaaagctattcaagggatcgtggtagcaccaactcgtgag
ttagcgattcaaacacaagaagaattatatcgtcttggtagagataaaaaaatccgcgta
caagtagtatacggtggggctgatatcggccgacaaattcgtgcacttaaagatgcacca
catattatcgtcggaacacctggtcgtttaattgaccatattaaccgtcgtactttaaaa
ttaaacaacattgaaacgttagtattagacgaagcagatgaaatgttaaacatgggcttc
ttagaagacattgaaacaatcatttcaagcacgccaagcgaacgtcaaacgttattattc
tcagcaacaatgcctaacagcattaaaaatattggtgtgaagttcatgaaaaatcctgaa
catgtaagcatcaaagctaaagaaatgacagctaatttaattgatcaatattatgttcgt
tgtaaagatttcgaaaaatttgatattatgactcgtttatttgatgttcaatcaccagac
ttaacgattgtttttgcccgtacaaaacgtcgcgttgacgaattagcacgcggtttagaa
tcacgtggttataaagcagaagggattcatggtgatttaactcaacaaaaacgtatgagc
gttttacgcgcattcaaatctaacacaattgatgtgttagtggcgactgacgtagcggct
cgtggtttagatatctctggtgttacccatgtctataactatgatattcctcaagatcct
gaaagctacgttcaccgtattggtcgtacaggccgtgccggtaaagaaggtatgtctatc
actttcgttacgccaaacgaaatggactacttacatgttattgaagatttaacgaaaaaa
cgtatgacaccattacgtccaccaaccgaacaagaagcgttgcaaggacaagtaaatgcg
gctattcaaacaattgaagctgacttagctaacaatggtttagaacaatacttaaaaaca
gcagaagctttattagaaaaatactctgctgaagatttagtggcgttattagtgaaatct
gtggcaaaagaagattcttctgctgtcccagtaaaaatcacaccagaacgtccattacca
tcaaatcgccgtaaaggcaaaggtggcggtggtaaaggccgtggtaatggtcgcggtaac
tacaatcgtggtggtaaccgtagcggtaacggcggtggacgtcgtaatgaccgtggcggt
gaacaacgtggcggcgagcgtggtgaacaacgaggcgaacgtcgtgaccgtggagaaaga
cgcgatcgtaaagaaggcggagaattccgtggtaacaacaaacgcaaagacgctggtcgc
aaacgtccagaaaaaagcaaacgcgatttcgtgatccgcactgcgaataaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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